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RNA pseudoknots: folding and finding
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scholarly article
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
review article
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title
RNA pseudoknots: folding and finding
(English)
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
author
Douglas H. Turner
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3
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Douglas H Turner
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
author name string
Biao Liu
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1
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
David H Mathews
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2
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
publication date
27 January 2010
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
published in
F1000 biology reports
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
volume
2
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
page(s)
8
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Europe PubMed Central
PubMed ID
20495679
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29 July 2017
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The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical.
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5 July 2018
NMR structure of the Aquifex aeolicus tmRNA pseudoknot PK1: new insights into the recoding event of the ribosomal trans-translation
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5 July 2018
A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting
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5 July 2018
Functional analysis of the pseudoknot structure in human telomerase RNA.
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5 July 2018
Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function
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Crystal structure of a phage Twort group I ribozyme-product complex
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Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site
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5 July 2018
Mutations linked to dyskeratosis congenita cause changes in the structural equilibrium in telomerase RNA.
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5 July 2018
A molecular switch underlies a human telomerase disease
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5 July 2018
Solution structure of a luteoviral P1-P2 frameshifting mRNA pseudoknot
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5 July 2018
Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution
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5 July 2018
Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting
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5 July 2018
RNA pseudoknot prediction in energy-based models
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5 July 2018
Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme
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5 July 2018
Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot
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5 July 2018
A dynamic programming algorithm for RNA structure prediction including pseudoknots
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5 July 2018
Structure of the 3'-hairpin of the TYMV pseudoknot: preformation in RNA folding
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5 July 2018
Crystal structure of a hepatitis delta virus ribozyme
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5 July 2018
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
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5 July 2018
NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA
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5 July 2018
A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus
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5 July 2018
Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus
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5 July 2018
Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.
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5 July 2018
The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus
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5 July 2018
Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions
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5 July 2018
An APL-programmed genetic algorithm for the prediction of RNA secondary structure
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5 July 2018
Fluorescence competition assay measurements of free energy changes for RNA pseudoknots
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873773
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29 October 2018
Tertiary structure of an RNA pseudoknot is stabilized by "diffuse" Mg2+ ions.
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PubMed Central
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29 October 2018
Structural basis for ribosome recruitment and manipulation by a viral IRES RNA.
1 reference
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29 October 2018
Prediction of consensus RNA secondary structures including pseudoknots.
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29 October 2018
A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting.
1 reference
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29 October 2018
HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
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29 October 2018
An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
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29 October 2018
A partition function algorithm for nucleic acid secondary structure including pseudoknots
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873773
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29 October 2018
An RNA folding method capable of identifying pseudoknots and base triples.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873773
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29 October 2018
Energetics of a strongly pH dependent RNA tertiary structure in a frameshifting pseudoknot
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20495679
retrieved
12 December 2020
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Identifiers
DOI
10.3410/B2-8
1 reference
stated in
Europe PubMed Central
PubMed ID
20495679
retrieved
29 July 2017
PMCID
2873773
1 reference
stated in
Europe PubMed Central
PubMed ID
20495679
retrieved
29 July 2017
PubMed ID
20495679
1 reference
stated in
Europe PubMed Central
PubMed ID
20495679
retrieved
29 July 2017
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