(Q33886559)

29 July 2017

title

Highly precise and developmentally programmed genome assembly in Paramecium requires ligase IV-dependent end joining (English)

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29 July 2017

1

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29 July 2017

9

Mireille Bétermier

1 reference

29 July 2017

6

Eric Meyer

1 reference

29 July 2017

8

Sophie Malinsky

1 reference

29 July 2017

Atsushi Matsuda

2

1 reference

29 July 2017

Antoine Marmignon

3

1 reference

29 July 2017

Michael Ku

4

1 reference

29 July 2017

Aude Silve

5

1 reference

29 July 2017

James D Forney

7

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29 July 2017

language of work or name

1 reference

14 April 2011

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29 July 2017

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29 July 2017

volume

7

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29 July 2017

issue

4

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29 July 2017

page(s)

e1002049

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Creative Commons Attribution 4.0 International

29 July 2017

copyright license

start time

14 April 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The conjugation-specific Die5 protein is required for development of the somatic nucleus in both Paramecium and Tetrahymena.

5 July 2018

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A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila

5 July 2018

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The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway

5 July 2018

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5 July 2018

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Developmental genome rearrangements in ciliates: a natural genomic subtraction mediated by non-coding transcripts.

5 July 2018

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5 July 2018

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MMEJ repair of double-strand breaks (director's cut): deleted sequences and alternative endings

5 July 2018

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5 July 2018

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Developmentally programmed DNA splicing in Paramecium reveals short-distance crosstalk between DNA cleavage sites.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

piggyBac can bypass DNA synthesis during cut and paste transposition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

V(D)J and immunoglobulin class switch recombinations: a paradigm to study the regulation of DNA end-joining.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Ku heterodimer-independent end joining in Trypanosoma brucei cell extracts relies upon sequence microhomology.

5 July 2018

1 reference

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Characterization of Agrobacterium tumefaciens DNA ligases C and D

5 July 2018

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

5 July 2018

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A generalized analysis of hydrophobic and loop clusters within globular protein sequences

5 July 2018

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ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data

5 July 2018

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

5 July 2018

1 reference

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Initiation of meiotic recombination by formation of DNA double-strand breaks: mechanism and regulation

5 July 2018

1 reference

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The SUMO pathway is developmentally regulated and required for programmed DNA elimination in Paramecium tetraurelia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Cernunnos interacts with the XRCC4 x DNA-ligase IV complex and is homologous to the yeast nonhomologous end-joining factor Nej1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

XLF interacts with the XRCC4-DNA ligase IV complex to promote DNA nonhomologous end-joining

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Cernunnos, a novel nonhomologous end-joining factor, is mutated in human immunodeficiency with microcephaly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Mitochondrial DNA ligases of Trypanosoma brucei

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

RNA-mediated programming of developmental genome rearrangements in Paramecium tetraurelia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Large-scale genome remodelling by the developmentally programmed elimination of germ line sequences in the ciliate Paramecium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Impact of the KU80 pathway on NHEJ-induced genome rearrangements in mammalian cells.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Mitochondrial DNA ligase in Crithidia fasciculata

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Processing of double-strand breaks is involved in the precise excision of paramecium internal eliminated sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Genome remodeling in ciliated protozoa.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

V(D)J recombination: RAG proteins, repair factors, and regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Crystal structure of an Xrcc4-DNA ligase IV complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

NPS@: network protein sequence analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Timing of developmentally programmed excision and circularization of Paramecium internal eliminated sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Targeted disruption of the gene encoding DNA ligase IV leads to lethality in embryonic mice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

A critical role for DNA end-joining proteins in both lymphogenesis and neurogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Late embryonic lethality and impaired V(D)J recombination in mice lacking DNA ligase IV

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Specific interference by ingested dsRNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Mammalian DNA double-strand break repair protein XRCC4 interacts with DNA ligase IV

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Hydrophobic cluster analysis reveals a third chromodomain in the Tetrahymena Pdd1p protein of the chromo superfamily

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Developmental precise excision of Oxytricha trifallax telomere-bearing elements and formation of circles closed by a copy of the flanking target duplication

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

The DNA of ciliated protozoa

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Selective Autolysis of Nuclei as a Source of DNA Precursors inParamecium aureliaExconjugants*

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

Genetic dissection of behavior in paramecium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077386

PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002049

RNA interference by feeding in Paramecium.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002049

Processing of DNA for nonhomologous end-joining is controlled by kinase activity and XRCC4/ligase IV.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002049

Nuclear differentiation and nucleic acid synthesis in well-fed exconjugants of Paramecium aurelia

21 January 2018

1 reference

12 December 2020

Selective inhibition of DNA synthesis in macronuclear fragments in Paramecium aurelia exconjugants and its reversal during macronuclear regeneration

1 reference

12 December 2020

Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences

1 reference

12 December 2020

Transient DNA breaks associated with programmed genomic deletion events in conjugating cells of Tetrahymena thermophila

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1002049

Identifiers

DOI

1 reference

29 July 2017

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29 July 2017

1 reference