(Q36095368)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

Ku heterodimer-independent end joining in Trypanosoma brucei cell extracts relies upon sequence microhomology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

author name string

Peter Burton

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

David J McBride

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

J David Barry

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Richard McCulloch

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

publication date

10 August 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

page(s)

1773-1781

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

3 January 2020

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2043400/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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2 October 2017

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2 October 2017

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Distinct roles for two RAD51-related genes in Trypanosoma brucei antigenic variation

2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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2 October 2017

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DNA ligase III as a candidate component of backup pathways of nonhomologous end joining

2 October 2017

1 reference

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2 October 2017

1 reference

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Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C

2 October 2017

1 reference

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2 October 2017

1 reference

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Rejoining of DNA double-strand breaks as a function of overhang length

2 October 2017

1 reference

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Telomere length regulation and transcriptional silencing in KU80-deficient Trypanosoma brucei

2 October 2017

1 reference

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The life and death of DNA-PK.

2 October 2017

1 reference

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A pathway of double-strand break rejoining dependent upon ATM, Artemis, and proteins locating to gamma-H2AX foci.

2 October 2017

1 reference

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A biochemically defined system for mammalian nonhomologous DNA end joining

2 October 2017

1 reference

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Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine

2 October 2017

1 reference

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Involvement of poly(ADP-ribose) polymerase-1 and XRCC1/DNA ligase III in an alternative route for DNA double-strand breaks rejoining.

2 October 2017

1 reference

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Genetic steps of mammalian homologous repair with distinct mutagenic consequences

2 October 2017

1 reference

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Impact of the KU80 pathway on NHEJ-induced genome rearrangements in mammalian cells.

2 October 2017

1 reference

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A molecular timescale of eukaryote evolution and the rise of complex multicellular life

2 October 2017

1 reference

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Yeast Mre11 and Rad1 proteins define a Ku-independent mechanism to repair double-strand breaks lacking overlapping end sequences

2 October 2017

1 reference

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ATP generation in the Trypanosoma brucei procyclic form: cytosolic substrate level is essential, but not oxidative phosphorylation.

2 October 2017

1 reference

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Biochemical evidence for Ku-independent backup pathways of NHEJ

2 October 2017

1 reference

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The paradoxical relationship between NHEJ and telomeric fusion

2 October 2017

1 reference

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Impact of DNA ligase IV on the fidelity of end joining in human cells

2 October 2017

1 reference

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Protozomics: trypanosomatid parasite genetics comes of age.

2 October 2017

1 reference

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DNA ligase IV-dependent NHEJ of deprotected mammalian telomeres in G1 and G2

2 October 2017

1 reference

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Involvement of human polynucleotide kinase in double-strand break repair by non-homologous end joining

2 October 2017

1 reference

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ATP-dependent DNA ligases

2 October 2017

1 reference

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Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination

2 October 2017

1 reference

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Different types of V(D)J recombination and end-joining defects in DNA double-strand break repair mutant mammalian cells

2 October 2017

1 reference

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Reconstitution of the mammalian DNA double-strand break end-joining reaction reveals a requirement for an Mre11/Rad50/NBS1-containing fraction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Promotion of Dnl4-catalyzed DNA end-joining by the Rad50/Mre11/Xrs2 and Hdf1/Hdf2 complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

NEJ1 controls non-homologous end joining in Saccharomyces cerevisiae

2 October 2017

1 reference

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NHEJ regulation by mating type is exercised through a novel protein, Lif2p, essential to the ligase IV pathway

2 October 2017

1 reference

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Crystal structure of an Xrcc4-DNA ligase IV complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Identification of bacterial homologues of the Ku DNA repair proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Accurate in vitro end joining of a DNA double strand break with partially cohesive 3'-overhangs and 3'-phosphoglycolate termini: effect of Ku on repair fidelity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

T-Coffee: A novel method for fast and accurate multiple sequence alignment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

DNA double-strand break repair in cell-free extracts from Ku80-deficient cells: implications for Ku serving as an alignment factor in non-homologous DNA end joining

2 October 2017

1 reference

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Ku recruits the XRCC4-ligase IV complex to DNA ends

2 October 2017

1 reference

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DNA-dependent protein kinase stimulates an independently active, nonhomologous, end-joining apparatus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

A phylogenomic study of DNA repair genes, proteins, and processes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

A role for RAD51 and homologous recombination in Trypanosoma brucei antigenic variation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Nonhomologous DNA end joining in cell-free systems

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

In vitro analysis of alpha-amanitin-resistant transcription from the rRNA, procyclic acidic repetitive protein, and variant surface glycoprotein gene promoters in Trypanosoma brucei

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Ku-dependent nonhomologous DNA end joining in Xenopus egg extracts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Double-strand break repair in Ku86- and XRCC4-deficient cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

DNA end-joining catalyzed by human cell-free extracts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Yeast DNA ligase IV mediates non-homologous DNA end joining

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

The joining of non-complementary DNA double-strand breaks by mammalian extracts

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Saccharomyces cerevisiae Ku70 potentiates illegitimate DNA double-strand break repair and serves as a barrier to error-prone DNA repair pathways

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Genetic requirements for the single-strand annealing pathway of double-strand break repair in Saccharomyces cerevisiae

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Trypanosome nuclear factors which bind to internal promoter elements of tRNA genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Sequence of the T4 recombination gene, uvsX, and its comparison with that of the recA gene of Escherichia coli

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

A novel pathway of DNA end-to-end joining

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Gross chromosomal rearrangements in Saccharomyces cerevisiae replication and recombination defective mutants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Match-Box_server: a multiple sequence alignment tool placing emphasis on reliability.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Structure of an Xrcc4-DNA ligase IV yeast ortholog complex reveals a novel BRCT interaction mode

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

The Mre11/Rad50/Xrs2 complex and non-homologous end-joining of incompatible ends in S. cerevisiae

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Backup pathways of NHEJ are suppressed by DNA-PK.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

A paradox in the in vitro end-joining assays

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Identification of DNA-PK in the arthropods. Evidence for the ancient ancestry of vertebrate non-homologous end-joining

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Joining of DNA ends bearing non-matching 3'-overhangs.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Two pathways of homologous recombination in Trypanosoma brucei

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Inactivation of Mre11 does not affect VSG gene duplication mediated by homologous recombination in Trypanosoma brucei.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Ku is important for telomere maintenance, but not for differential expression of telomeric VSG genes, in African trypanosomes

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Multiple pathways cooperate in the suppression of genome instability in Saccharomyces cerevisiae

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Rejoining of DNA double-strand breaks in vitro by single-strand annealing.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

Comparative Genomics of Hemiascomycete Yeasts: Genes Involved in DNA Replication, Repair, and Recombination

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2043400

High G/C content of cohesive overhangs renders DNA end joining Ku-independent

5 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17693593

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Studies on glycerol kinase and its role in ATP synthesis in Trypanosoma brucei

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17693593

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/EC.00212-07

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17693593%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference