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High accuracy operon prediction method based on STRING database scores.
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
title
High accuracy operon prediction method based on STRING database scores
(English)
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stated in
Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
main subject
database
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Search Tool for the Retrieval of Interacting Genes/Proteins
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Blanca Taboada
series ordinal
1
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
Enrique Merino
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3
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
author name string
Cristina Verde
series ordinal
2
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
language of work or name
English
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publication date
12 April 2010
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
published in
Nucleic Acids Research
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
volume
38
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
issue
12
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Europe PubMed Central
PMC publication ID
2896540
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
page(s)
e130
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Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
copyright license
Creative Commons Attribution-NonCommercial 2.5 Generic
start time
7 November 2016
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April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
STRING 8--a global view on proteins and their functional interactions in 630 organisms
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PubMed Central
reference URL
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The relative value of operon predictions.
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PubMed Central
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5 July 2018
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
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5 July 2018
Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Operon prediction using both genome-specific and general genomic information
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Operon prediction in Pyrococcus furiosus
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PubMed Central
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5 July 2018
A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context
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5 July 2018
A novel method for accurate operon predictions in all sequenced prokaryotes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Conservation of adjacency as evidence of paralogous operons
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
The COG database: an updated version includes eukaryotes
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5 July 2018
Computational identification of operons in microbial genomes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Prediction of operons in microbial genomes
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Operons in Escherichia coli: genomic analyses and predictions
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Identification and transcriptional analysis of the Escherichia coli htrE operon which is homologous to pap and related pilin operons
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Growth rate regulation of Escherichia coli acetyl coenzyme A carboxylase, which catalyzes the first committed step of lipid biosynthesis
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Identification of the genes in the Escherichia coli ileS-lsp operon. Analysis of multiple polycistronic mRNAs made in vivo
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Characterization of the ileS-lsp operon in Escherichia coli. Identification of an open reading frame upstream of the ileS gene and potential promoter(s) for the ileS-lsp operon
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
Basic local alignment search tool
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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5 July 2018
A universal operon predictor for prokaryotic genomes.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
retrieved
29 October 2018
Detection of operons.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
retrieved
29 October 2018
Computational prediction of operons in Synechococcus sp. WH8102.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
retrieved
29 October 2018
A fuzzy guided genetic algorithm for operon prediction
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
retrieved
29 October 2018
Operon prediction without a training set.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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29 October 2018
Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
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29 October 2018
A Bayesian network approach to operon prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
retrieved
29 October 2018
Operon prediction based on SVM
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896540
retrieved
29 October 2018
Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20385580
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKQ254
1 reference
stated in
Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
PMC publication ID
2896540
1 reference
stated in
Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
PubMed publication ID
20385580
1 reference
stated in
Europe PubMed Central
PMC publication ID
2896540
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20385580%20AND%20SRC:MED&resulttype=core&format=json
retrieved
30 January 2020
ResearchGate publication ID
43130774
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