(Q33968205)

30 July 2017

title

Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: the p53 example (English)

1 reference

protein-protein interaction

30 July 2017

main subject

1 reference

5

Ruth Nussinov

1 reference

30 July 2017

Nurcan Tuncbag

1

0 references

Attila Gursoy

object named as

Attila Gursoy

series ordinal

3

0 references

Gozde Kar

series ordinal

2

object named as

Gozde Kar

1 reference

30 July 2017

4

Ozlem Keskin

1 reference

30 July 2017

publication date

1 December 2009

1 reference

30 July 2017

1 reference

30 July 2017

volume

5

1 reference

30 July 2017

issue

12

1 reference

30 July 2017

page(s)

1770-1778

1 reference

Topological properties of protein interaction networks from a structural perspective

30 July 2017

cites work

1 reference

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Analyzing protein interaction networks using structural information

5 July 2018

1 reference

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Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data

5 July 2018

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5 July 2018

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Revealing static and dynamic modular architecture of the eukaryotic protein interaction network

5 July 2018

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c-Abl tyrosine kinase activates p21 transcription via interaction with p53.

5 July 2018

1 reference

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Relating three-dimensional structures to protein networks provides evolutionary insights

5 July 2018

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5 July 2018

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5 July 2018

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Functional clustering of yeast proteins from the protein-protein interaction network

5 July 2018

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5 July 2018

1 reference

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NOXclass: prediction of protein-protein interaction types

5 July 2018

1 reference

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Stabilization of E2F1 protein by MDM2 through the E2F1 ubiquitination pathway

5 July 2018

1 reference

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PRISM: protein interactions by structural matching

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Towards cellular systems in 4D.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Protein complexes: structure prediction challenges for the 21st century

5 July 2018

1 reference

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Dynamic Complex Formation During the Yeast Cell Cycle

5 July 2018

1 reference

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5 July 2018

1 reference

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Evidence for dynamically organized modularity in the yeast protein-protein interaction network

5 July 2018

1 reference

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A method for simultaneous alignment of multiple protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

NMR solution structure of a peptide from the mdm-2 binding domain of the p53 protein that is selectively cytotoxic to cancer cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

The Database of Interacting Proteins: 2004 update

5 July 2018

1 reference

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BIND: the Biomolecular Interaction Network Database

5 July 2018

1 reference

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Structural basis for the recognition of the E2F transactivation domain by the retinoblastoma tumor suppressor

5 July 2018

1 reference

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The third dimension for protein interactions and complexes.

5 July 2018

1 reference

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Tyrosine phosphorylation of Mdm2 by c-Abl: implications for p53 regulation

5 July 2018

1 reference

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MDM2 inhibits PCAF (p300/CREB-binding protein-associated factor)-mediated p53 acetylation

5 July 2018

1 reference

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Interrogating protein interaction networks through structural biology

5 July 2018

1 reference

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Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair

5 July 2018

1 reference

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5 July 2018

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1 reference

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Flt3 ligand structure and unexpected commonalities of helical bundles and cystine knots

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Molecular interaction map of the mammalian cell cycle control and DNA repair systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Structure of the arginine repressor from Bacillus stearothermophilus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Interaction between the retinoblastoma protein and the oncoprotein MDM2

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Stimulation of E2F1/DP1 transcriptional activity by MDM2 oncoprotein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Mapping of phosphomonoester and apparent phosphodiester bonds of the oncogene product p53 from simian virus 40-transformed 3T3 cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Phosphorylation of p53 in normal and simian virus 40-transformed NIH 3T3 cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Phosphorylation sites in the amino-terminal region of mouse p53

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1039%2FB905661K

Characterization and Prediction of Protein Interfaces to Infer Protein-Protein Interaction Networks

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

HotSprint: database of computational hot spots in protein interfaces

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Robustness of the p53 network and biological hackers.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Missing the target: ubiquitin ligase drugs stall

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Computational redesign of protein-protein interaction specificity

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Rational design of faster associating and tighter binding protein complexes.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Recognizing and Defining True Ras Binding Domains II: In Silico Prediction Based on Homology Modelling and Energy Calculations

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2898629

Ku80 can translocate to the nucleus independent of the translocation of Ku70 using its own nuclear localization signal

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19585003

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1039/B905661K

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference