(Q33972122)

30 July 2017

title

Simple chained guide trees give high-quality protein multiple sequence alignments (English)

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30 July 2017

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3

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30 July 2017

Kieran Boyce

1

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author name string

Fabian Sievers

series ordinal

2

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30 July 2017

language of work or name

English

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publication date

7 July 2014

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

published in

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30 July 2017

volume

111

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30 July 2017

issue

29

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30 July 2017

page(s)

10556-10561

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Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

Sequence embedding for fast construction of guide trees for multiple sequence alignment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

An algorithm for progressive multiple alignment of sequences with insertions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

MUSCLE: multiple sequence alignment with high accuracy and high throughput

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

HOMSTRAD: a database of protein structure alignments for homologous families

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

Pfam: a comprehensive database of protein domain families based on seed alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

A flexible method to align large numbers of biological sequences.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

Hierarchical method to align large numbers of biological sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

CLUSTAL V: improved software for multiple sequence alignment

28 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

28 July 2018

https://api.crossref.org/works/10.1073%2FPNAS.1405628111

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1405628111

Multiple alignment by aligning alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1405628111

Making automated multiple alignments of very large numbers of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1405628111

The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1405628111

A reality check for alignments and trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1405628111

The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115562

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25002495

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1405628111

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30 July 2017

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30 July 2017

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