(Q33975599)

30 July 2017

title

Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database (English)

1 reference

protein-protein interaction

30 July 2017

0 references

1 reference

3

Tom L Blundell

1 reference

30 July 2017

2

Alicia P Higueruelo

1 reference

30 July 2017

George R Bickerton

1

1 reference

30 July 2017

language of work or name

1 reference

29 July 2011

1 reference

30 July 2017

1 reference

30 July 2017

volume

12

1 reference

30 July 2017

page(s)

313

1 reference

Creative Commons Attribution 2.0 Generic

30 July 2017

copyright license

start time

29 July 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-313

0 references

cites work

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5 July 2018

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Remediation of the protein data bank archive

5 July 2018

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The Pfam protein families database

5 July 2018

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Characterization of protein-protein interfaces

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations

5 July 2018

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Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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SCOPPI: a structural classification of protein-protein interfaces

5 July 2018

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Very fast empirical prediction and rationalization of protein pKa values

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

A protein domain interaction interface database: InterPare

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

PRISM: protein interactions by structural matching

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Morphological aspects of oligomeric protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

3did: interacting protein domains of known three-dimensional structure

5 July 2018

1 reference

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A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

5 July 2018

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The ASTRAL Compendium in 2004

5 July 2018

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PDB file parser and structure class implemented in Python

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Analysing six types of protein-protein interfaces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Computational methods for the prediction of protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

The Cambridge Structural Database: a quarter of a million crystal structures and rising

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

5 July 2018

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Evidence for a strong sulfur-aromatic interaction derived from crystallographic data

5 July 2018

1 reference

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The ASTRAL compendium for protein structure and sequence analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

5 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Cation-pi interactions in structural biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

The packing density in proteins: standard radii and volumes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Principles of protein-protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Satisfying hydrogen bonding potential in proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

SCOP: a structural classification of proteins database for the investigation of sequences and structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Disulphide bridges in globular proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

A simple method for displaying the hydropathic character of a protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

The interpretation of protein structures: Estimation of static accessibility

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

The interpretation of protein structures: Total volume, group volume distributions and packing density

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

PQS: a protein quaternary structure file server

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

InterPreTS: protein interaction prediction through tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

DOCKGROUND resource for studying protein-protein interfaces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

ICBS: a database of interactions between protein chains mediated by beta-sheet formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

PIBASE: a comprehensive database of structurally defined protein interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

ProtBuD: a database of biological unit structures of protein families and superfamilies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

Calculations of protein volumes: sensitivity analysis and parameter database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

Amino/aromatic interactions in proteins: is the evidence stacked against hydrogen bonding?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

21 January 2018

Ion-pairs in proteins

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

CREDO: a protein-ligand interaction database for drug discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

A structural bioinformatics approach to the analysis of nonsynonymous single nucleotide polymorphisms (nsSNPs) and their relation to disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

Atomic interactions and profile of small molecules disrupting protein-protein interfaces: the TIMBAL database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

BIPA: a database for protein-nucleic acid interaction in 3D structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-313

Structural bioinformatics mutation analysis reveals genotype-phenotype correlations in von Hippel-Lindau disease and suggests molecular mechanisms of tumorigenesis

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Residue frequencies and pairing preferences at protein-protein interfaces.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Use of pair potentials across protein interfaces in screening predicted docked complexes.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

Statistical analysis of predominantly transient protein-protein interfaces

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3161047

A soft, mean-field potential derived from crystal contacts for predicting protein-protein interactions

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21801404

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DAPID: a 3D-domain annotated protein-protein interaction database

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21801404

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-313

1 reference

journals/bmcbi/BickertonHB11

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

30 July 2017

1 reference