(Q33981594)

30 July 2017

title

Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics (English)

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30 July 2017

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whole genome sequencing

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6

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30 July 2017

5

Alejandro A Schäffer

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30 July 2017

author name string

Salim Akhter Chowdhury

1

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30 July 2017

Stanley E Shackney

2

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30 July 2017

Kerstin Heselmeyer-Haddad

3

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30 July 2017

Thomas Ried

4

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30 July 2017

publication date

31 July 2014

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PLOS Computational Biology

30 July 2017

published in

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30 July 2017

volume

10

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30 July 2017

issue

7

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30 July 2017

page(s)

e1003740

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Creative Commons CC0 License

30 July 2017

copyright license

start time

31 July 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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cites work

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5 July 2018

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5 July 2018

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5 July 2018

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Accurate reconstruction of the temporal order of mutations in neoplastic progression

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5 July 2018

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Tumour evolution inferred by single-cell sequencing

5 July 2018

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Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Inferring progression models for CGH data

5 July 2018

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Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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DBC2, a candidate for a tumor suppressor gene involved in breast cancer

5 July 2018

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High-resolution mapping of the 11q13 amplicon and identification of a gene, TAOS1, that is amplified and overexpressed in oral cancer cells.

5 July 2018

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Cyclooxygenase-2: a target for the prevention and treatment of breast cancer

5 July 2018

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The ZNF217 gene amplified in breast cancers promotes immortalization of human mammary epithelial cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

Median-joining networks for inferring intraspecific phylogenies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

Inferring tree models for oncogenesis from comparative genome hybridization data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

Cadherin expression in carcinomas: role in the formation of cell junctions and the prevention of invasiveness

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

The neighbor-joining method: a new method for reconstructing phylogenetic trees

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

A genetic model for colorectal tumorigenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

The clonal evolution of tumor cell populations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

Distance-based reconstruction of tree models for oncogenesis.

5 July 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

Estimating an oncogenetic tree when false negatives and positives are present

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

Mtreemix: a software package for learning and using mixture models of mutagenetic trees.

21 January 2018

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Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

Cell lineage analysis of acute leukemia relapse uncovers the role of replication-rate heterogeneity and microsatellite instability.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

Evolution of human BCR-ABL1 lymphoblastic leukaemia-initiating cells.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

Mosaic amplification of multiple receptor tyrosine kinase genes in glioblastoma.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

Estimating cancer survival and clinical outcome based on genetic tumor progression scores.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

A metric for phylogenetic trees based on matching.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

The Hungarian method for the assignment problem

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003740

Clonal cytogenetic progression within intratumorally heterogeneous meningiomas predicts tumor recurrence.

21 January 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

Multivariate analyses of genomic imbalances in solid tumors reveal distinct and converging pathways of karyotypic evolution.

29 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4117424

Distinctive patterns of Her-2/neu, c-myc, and cyclin D1 gene amplification by fluorescence in situ hybridization in primary human breast cancers

29 October 2018

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12 December 2020

Detection of chromosomal aneuploidies and gene copy number changes in fine needle aspirates is a specific, sensitive, and objective genetic test for the diagnosis of breast cancer

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12 December 2020

A phylogenetic analysis identifies heterogeneity among hepatocellular carcinomas

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12 December 2020

Prox1 function is required for the development of the murine lymphatic system

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12 December 2020

Semi-quantitative fluorescent PCR analysis identifies PRKAA1 on chromosome 5 as a potential candidate cancer gene of cervical cancer

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12 December 2020

10.1371/JOURNAL.PCBI.1003740

Identifiers

DOI

1 reference

journals/ploscb/ChowdhurySHRSS14

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference