(Q34001154)

30 July 2017

title

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams (English)

1 reference

30 July 2017

Joan Segura

1

1 reference

30 July 2017

Pamela F Jones

series ordinal

2

1 reference

30 July 2017

Narcis Fernandez-Fuentes

series ordinal

3

1 reference

30 July 2017

publication date

23 August 2011

1 reference

30 July 2017

1 reference

30 July 2017

volume

12

1 reference

30 July 2017

page(s)

352

1 reference

Restricted sidechain plasticity in the structures of native proteins and complexes

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Progress and challenges in predicting protein-protein interaction sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Prediction of protein-protein interaction sites in sequences and 3D structures by random forests

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

StAR: a simple tool for the statistical comparison of ROC curves

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Protein-protein docking benchmark version 3.0.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Revisiting the Voronoi description of protein-protein interfaces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Protein binding site prediction using an empirical scoring function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

WHISCY: what information does surface conservation yield? Application to data-driven docking.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Protein-Protein Docking Benchmark 2.0: an update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Voro3D: 3D Voronoi tessellations applied to protein structures.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Analysing six types of protein-protein interfaces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Side-chain conformational entropy at protein-protein interfaces.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

SCOP: a structural classification of proteins database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

The atomic structure of protein-protein recognition sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

On the definition and the construction of pockets in macromolecules.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

An evolutionary trace method defines binding surfaces common to protein families

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Principles of protein-protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

The subunit interfaces of oligomeric enzymes are conserved to a similar extent to the overall protein sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Protein-protein interactions: a review of protein dimer structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Predicting protein interaction sites from residue spatial sequence profile and evolution rate.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

A two-stage classifier for identification of protein-protein interface residues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

Prediction of protein--protein interaction sites in heterocomplexes with neural networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

Predicted protein-protein interaction sites from local sequence information.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

Improved prediction of protein-protein binding sites using a support vector machines approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

Insights into protein-protein interfaces using a Bayesian network prediction method

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

Calculations of protein volumes: sensitivity analysis and parameter database.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

A protein-protein docking benchmark.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-352

Prediction-based fingerprints of protein-protein interactions.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Residue frequencies and pairing preferences at protein-protein interfaces.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Prediction of protein-protein interaction sites using patch analysis

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171731

Structural and docking studies of Leucaena leucocephala Cinnamoyl CoA reductase

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21861881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Morphology of protein-protein interfaces.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21861881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-352

1 reference

journals/bmcbi/SeguraJF11

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

30 July 2017

1 reference