(Q34003605)

30 July 2017

title

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan (English)

1 reference

30 July 2017

6

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30 July 2017

19

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30 July 2017

Morana Vitezic

7

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Dejan Lazarevic

Dejan Lazarevic

10

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Nicolas Bertin

Nicolas Bertin

2

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Charles Plessy

Charles Plessy

1

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Carsten O Daub

Carsten O Daub

21

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Piero Carninci

Piero Carninci

24

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Yoshihide Hayashizaki

22

Yoshihide Hayashizaki

1 reference

30 July 2017

23

Stefano Gustincich

1 reference

30 July 2017

18

Carrie A Davis

1 reference

30 July 2017

8

Jessica Severin

1 reference

30 July 2017

11

Nadine Hornig

1 reference

30 July 2017

12

Valerio Orlando

1 reference

30 July 2017

3

Hazuki Takahashi

1 reference

30 July 2017

9

Signe Olivarius

1 reference

30 July 2017

Roberto Simone

4

1 reference

30 July 2017

Md Salimullah

5

1 reference

30 July 2017

Ian Bell

13

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30 July 2017

Hui Gao

14

1 reference

30 July 2017

Jacqueline Dumais

15

1 reference

30 July 2017

Philipp Kapranov

16

1 reference

30 July 2017

Huaien Wang

17

1 reference

30 July 2017

Jun Kawai

20

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30 July 2017

language of work or name

1 reference

13 June 2010

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30 July 2017

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30 July 2017

volume

7

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30 July 2017

issue

7

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30 July 2017

page(s)

528-534

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Digital transcriptome profiling from attomole-level RNA samples

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Whole genome transcriptome analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Implications of chimaeric non-co-linear transcripts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

The regulated retrotransposon transcriptome of mammalian cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

High-throughput verification of transcriptional starting sites by Deep-RACE.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Accurate whole human genome sequencing using reversible terminator chemistry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Stem cell transcriptome profiling via massive-scale mRNA sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

RNA maps reveal new RNA classes and a possible function for pervasive transcription

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Genome-wide analysis of mammalian promoter architecture and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

CAGE: cap analysis of gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Finishing the euchromatic sequence of the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

A highly sensitive method for mapping the 5' termini of mRNAs.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Determination of messenger RNA 5'-ends by reverse transcription of the cap structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2906222

The long and short of RNAs

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20543846

12 December 2020

inferred from PubMed ID database lookup

Reverse transcription using random pentadecamer primers increases yield and quality of resulting cDNA.

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

A highly efficient method for long-chain cDNA synthesis using trehalose and betaine.

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

Tunable fractionation of nucleic acids

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

Chromatin: its isolation from cultured mammalian cells with particular reference to contamination by nuclear ribnucleoprotein particles

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

TopHat: discovering splice junctions with RNA-Seq

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

Repbase Update, a database of eukaryotic repetitive elements

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.1470

7 January 2021

Identifiers

DOI

10.1038/NMETH.1470

1 reference

Dimensions Publication ID

30 July 2017

0 references

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30 July 2017

1 reference