(Q34005147)

30 July 2017

title

Categorizing biases in high-confidence high-throughput protein-protein interaction data sets (English)

1 reference

protein-protein interaction

30 July 2017

1 reference

1 reference

Anders Wallqvist

4

0 references

author name string

Xueping Yu

1

1 reference

30 July 2017

Joseph Ivanic

2

1 reference

30 July 2017

Vesna Memisević

3

1 reference

30 July 2017

Jaques Reifman

5

1 reference

30 July 2017

publication date

29 August 2011

1 reference

Molecular & Cellular Proteomics

30 July 2017

published in

1 reference

30 July 2017

volume

10

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30 July 2017

issue

12

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30 July 2017

page(s)

M111.012500

1 reference

Nonspecific binding limits the number of proteins in a cell and shapes their interaction networks

30 July 2017

cites work

1 reference

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New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Structural interpretation of protein-protein interaction network

5 July 2018

1 reference

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Toward the dynamic interactome: it's about time

5 July 2018

1 reference

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Activation of a poised RNAPII-dependent promoter requires both SAGA and mediator

5 July 2018

1 reference

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Evolution of biomolecular networks: lessons from metabolic and protein interactions

5 July 2018

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Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins

5 July 2018

1 reference

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A novel scoring approach for protein co-purification data reveals high interaction specificity

5 July 2018

1 reference

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Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae

5 July 2018

1 reference

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5 July 2018

1 reference

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Influence of protein abundance on high-throughput protein-protein interaction detection

5 July 2018

1 reference

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A complex-based reconstruction of the Saccharomyces cerevisiae interactome

5 July 2018

1 reference

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Challenges and rewards of interaction proteomics

5 July 2018

1 reference

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Probing the extent of randomness in protein interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

High-quality binary protein interaction map of the yeast interactome network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

An in vivo map of the yeast protein interactome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Making the most of high-throughput protein-interaction data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

5 July 2018

1 reference

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Universal strategies in research and drug discovery based on protein-fragment complementation assays

5 July 2018

1 reference

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Identification of functional modules using network topology and high-throughput data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

How complete are current yeast and human protein-interaction networks?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

The value of high quality protein-protein interaction networks for systems biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Functional clustering of yeast proteins from the protein-protein interaction network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Evolutionary and physiological importance of hub proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Combining functional and topological properties to identify core modules in protein interaction networks.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Why do hubs tend to be essential in protein networks?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Proteome survey reveals modularity of the yeast cell machinery

5 July 2018

1 reference

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MPact: the MIPS protein interaction resource on yeast

5 July 2018

1 reference

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High-throughput two-hybrid analysis. The promise and the peril

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Interdependent recruitment of SAGA and Srb mediator by transcriptional activator Gcn4p

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Chromatin remodeling by RNA polymerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

MIPS: analysis and annotation of proteins from whole genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Comparative assessment of large-scale data sets of protein-protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Functional organization of the yeast proteome by systematic analysis of protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Relating whole-genome expression data with protein-protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Lethality and centrality in protein networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

A comprehensive two-hybrid analysis to explore the yeast protein interactome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Error and attack tolerance of complex networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Three-dimensional structures of the TAFII-containing complexes TFIID and TFTC.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

SGD: Saccharomyces Genome Database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Unraveling the conundrum of seemingly discordant protein-protein interaction datasets.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Energetic determinants of protein binding specificity: insights into protein interaction networks

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Protein-protein interaction networks and biology--what's the connection?

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Functional topology in a network of protein interactions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Gaining confidence in high-throughput protein interaction networks

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

The cell as a collection of protein machines: preparing the next generation of molecular biologists

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3237088

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21876202

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M111.012500

1 reference

30 July 2017

1 reference

30 July 2017

1 reference