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The exozyme model: a continuum of functionally distinct complexes.
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16 January 2020
title
The exozyme model: a continuum of functionally distinct complexes
(English)
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3004051
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21068185%20AND%20SRC:MED&resulttype=core&format=json
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16 January 2020
author
Daniel L Kiss
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16 January 2020
author name string
Erik D Andrulis
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2
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3004051
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English
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10 November 2010
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16 January 2020
published in
RNA
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16 January 2020
volume
17
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16 January 2020
issue
1
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Europe PubMed Central
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16 January 2020
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16 January 2020
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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
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5 July 2018
Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
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Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
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Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome
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A KH domain RNA binding protein, KSRP, promotes ARE-directed mRNA turnover by recruiting the degradation machinery
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High-definition macromolecular composition of yeast RNA-processing complexes
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Global analysis of protein expression in yeast
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Global analysis of protein localization in budding yeast
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Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins
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5 July 2018
An exosome-like complex in Sulfolobus solfataricus
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5 July 2018
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo
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5 July 2018
Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae
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5 July 2018
Nuclear mRNA surveillance
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5 July 2018
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradation
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5 July 2018
Genome-wide analysis of nuclear mRNA export pathways in Drosophila
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5 July 2018
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
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5 July 2018
An efficient protein complex purification method for functional proteomics in higher eukaryotes
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
CML28 is a broadly immunogenic antigen, which is overexpressed in tumor cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Autoantibodies directed to novel components of the PM/Scl complex, the human exosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The 3' end formation in small RNAs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The yin and yang of the exosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'-->5' exonuclease containing S1 and KH RNA-binding domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Functional organization of the yeast proteome by systematic analysis of protein complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Ski7p G protein interacts with the exosome and the Ski complex for 3'-to-5' mRNA decay in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The exosome of Trypanosoma brucei
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The Saccharomyces cerevisiae small GTPase, Gsp1p/Ran, is involved in 3' processing of 7S-to-5.8S rRNA and in degradation of the excised 5'-A0 fragment of 35S pre-rRNA, both of which are carried out by the exosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The human exosome: an autoantigenic complex of exoribonucleases in myositis and scleroderma
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Splicing and 3' end formation in the definition of nonsense-mediated decay-competent human beta-globin mRNPs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
RNA processing marches on.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Degradation of ribosomal RNA precursors by the exosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
The 3' end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
5 July 2018
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
29 October 2018
Untemplated oligoadenylation promotes degradation of RISC-cleaved transcripts.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
29 October 2018
Rapid tRNA decay can result from lack of nonessential modifications.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
29 October 2018
Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
29 October 2018
The roles of intersubunit interactions in exosome stability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
29 October 2018
Functional genomic analysis of apoptotic DNA degradation in C. elegans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
29 October 2018
Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3004051
retrieved
29 October 2018
Chapter 20 Expression, Reconstitution, and Structure of an Archaeal RNA Degrading Exosome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21068185
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The evolutionarily conserved subunits Rrp4 and Csl4 confer different substrate specificities to the archaeal exosome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21068185
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The role of the 3′ external transcribed spacer in yeast pre-rRNA processing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21068185
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21068185
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Structural framework for the mechanism of archaeal exosomes in RNA processing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21068185
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1261/RNA.2364811
1 reference
stated in
Europe PubMed Central
PMC publication ID
3004051
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21068185%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 January 2020
PMC publication ID
3004051
1 reference
stated in
Europe PubMed Central
PMC publication ID
3004051
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21068185%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 January 2020
PubMed publication ID
21068185
1 reference
stated in
Europe PubMed Central
PMC publication ID
3004051
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21068185%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 January 2020
ResearchGate publication ID
47742432
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