(Q34028838)

30 July 2017

title

Coevolution of amino acid residues in the key photosynthetic enzyme Rubisco (English)

1 reference

30 July 2017

0 references

1 reference

2

Maxim V Kapralov

1 reference

30 July 2017

Mingcong Wang

1

1 reference

30 July 2017

Maria Anisimova

series ordinal

3

1 reference

30 July 2017

language of work or name

1 reference

23 September 2011

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30 July 2017

published in

BMC Evolutionary Biology

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30 July 2017

volume

11

1 reference

30 July 2017

page(s)

266

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-11-266

30 July 2017

exact match

0 references

cites work

Detecting coevolving positions in a molecule: why and how to account for phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Positive selection differs between protein secondary structure elements in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Investigating protein-coding sequence evolution with probabilistic codon substitution models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Protein co-evolution, co-adaptation and interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

An improved general amino acid replacement matrix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Structure and function of Rubisco

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Detecting groups of coevolving positions in a molecule: a clustering approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Detecting coevolution in and among protein domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Discoveries in Rubisco (Ribulose 1,5-bisphosphate carboxylase/oxygenase): a historical perspective.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Widespread positive selection in the photosynthetic Rubisco enzyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

PAML 4: phylogenetic analysis by maximum likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Bayes empirical bayes inference of amino acid sites under positive selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Modeling the site-specific variation of selection patterns along lineages

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Using multiple sequence correlation analysis to characterize functionally important protein regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Rubisco: structure, regulatory interactions, and possibilities for a better enzyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Codon-substitution models for heterogeneous selection pressure at amino acid sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

PAML: a program package for phylogenetic analysis by maximum likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

VMD: visual molecular dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

Detecting site-specific biochemical constraints through substitution mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

Neutralism and selectionism: a network-based reconciliation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

Positive and negative selection of mutant forms of prokaryotic (cyanobacterial) ribulose-1,5-bisphosphate carboxylase/oxygenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

Directed evolution of rubisco in Escherichia coli reveals a specificity-determining hydrogen bond in the form II enzyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

A model-based approach for detecting coevolving positions in a molecule.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

Residue frequencies and pairing preferences at protein-protein interfaces.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3190394

Chloroplast gene sequence for the large subunit of ribulose bisphosphatecarboxylase of maize

29 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

Species variation in the specificity of ribulose biphosphate carboxylase/oxygenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-266

Coevolutionary patterns in cytochrome c oxidase subunit I depend on structural and functional context

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21942934

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Advancing our understanding and capacity to engineer nature's CO2-sequestering enzyme, Rubisco

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21942934

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Changes in Rubisco Kinetics during the Evolution of C4 Photosynthesis in Flaveria (Asteraceae) Are Associated with Positive Selection on Genes Encoding the Enzyme

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21942934

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-11-266

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference