(Q34044319)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

0 references

Sébastien Britton

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Emma Dernoncourt

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Christine Delteil

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Odile Schiltz

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Bernard Salles

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Philippe Frit

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

language of work or name

English

0 references

publication date

16 July 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

volume

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

issue

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

page(s)

9047-9062

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

9 March 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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The contribution of co-transcriptional RNA:DNA hybrid structures to DNA damage and genome instability

28 July 2018

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DNA damage: RNA-binding proteins protect from near and far.

28 July 2018

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PARP-1 dependent recruitment of the amyotrophic lateral sclerosis-associated protein FUS/TLS to sites of oxidative DNA damage.

28 July 2018

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Interaction of FUS and HDAC1 regulates DNA damage response and repair in neurons.

28 July 2018

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A new method for high-resolution imaging of Ku foci to decipher mechanisms of DNA double-strand break repair

28 July 2018

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The RNA-binding protein fused in sarcoma (FUS) functions downstream of poly(ADP-ribose) polymerase (PARP) in response to DNA damage

28 July 2018

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Pre-mRNA processing factors meet the DNA damage response

28 July 2018

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The repair and signaling responses to DNA double-strand breaks

28 July 2018

1 reference

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The role of hnRPUL1 involved in DNA damage response is related to PARP1.

28 July 2018

1 reference

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Transcription-replication encounters, consequences and genomic instability

28 July 2018

1 reference

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Detection and repair of ionizing radiation-induced DNA double strand breaks: new developments in nonhomologous end joining

28 July 2018

1 reference

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Transcription blockage by homopurine DNA sequences: role of sequence composition and single-strand breaks.

28 July 2018

1 reference

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Senataxin, defective in the neurodegenerative disorder ataxia with oculomotor apraxia 2, lies at the interface of transcription and the DNA damage response

28 July 2018

1 reference

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PARP activation regulates the RNA-binding protein NONO in the DNA damage response to DNA double-strand breaks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Recognition, signaling, and repair of DNA double-strand breaks produced by ionizing radiation in mammalian cells: the molecular choreography

28 July 2018

1 reference

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Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress

28 July 2018

1 reference

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R loops: from transcription byproducts to threats to genome stability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Regulation of DNA-end resection by hnRNPU-like proteins promotes DNA double-strand break signaling and repair

28 July 2018

1 reference

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A genome-wide homologous recombination screen identifies the RNA-binding protein RBMX as a component of the DNA-damage response

28 July 2018

1 reference

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Transcription as a source of genome instability

28 July 2018

1 reference

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Nuclear matrix factor hnRNP U/SAF-A exerts a global control of alternative splicing by regulating U2 snRNP maturation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Ku counteracts mobilization of PARP1 and MRN in chromatin damaged with DNA double-strand breaks.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The emerging role of pre-messenger RNA splicing in stress responses: sending alternative messages and silent messengers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Dynamics of DNA damage response proteins at DNA breaks: a focus on protein modifications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Preferential repair of oxidized base damage in the transcribed genes of mammalian cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Sequences in PSF/SFPQ mediate radioresistance and recruitment of PSF/SFPQ-containing complexes to DNA damage sites in human cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

ATM-dependent and -independent dynamics of the nuclear phosphoproteome after DNA damage

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Cotranscriptional exon skipping in the genotoxic stress response

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The DNA Damage Response: Making It Safe to Play with Knives

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The splicing-factor related protein SFPQ/PSF interacts with RAD51D and is necessary for homology-directed repair and sister chromatid cohesion

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The role of mechanistic factors in promoting chromosomal translocations found in lymphoid and other cancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

PARP inhibition: PARP1 and beyond

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Cellular radiosensitivity: how much better do we understand it?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Cell nonhomologous end joining capacity controls SAF-A phosphorylation by DNA-PK in response to DNA double-strand breaks inducers.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Poly(ADP-ribose)-dependent regulation of DNA repair by the chromatin remodeling enzyme ALC1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Physical and functional interaction between heterochromatin protein 1alpha and the RNA-binding protein heterogeneous nuclear ribonucleoprotein U.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Response of heterogeneous ribonuclear proteins (hnRNP) to ionising radiation and their involvement in DNA damage repair

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Comparative analysis of different laser systems to study cellular responses to DNA damage in mammalian cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

hnRNP-U is a specific DNA-dependent protein kinase substrate phosphorylated in response to DNA double-strand breaks.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

DNA repair in mammalian cells: DNA double-strand break repair: how to fix a broken relationship.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Exploring RNA transcription and turnover in vivo by using click chemistry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The histone acetyltransferase PCAF associates with actin and hnRNP U for RNA polymerase II transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

hnRNP-U enhances the expression of specific genes by stabilizing mRNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Dynamic assembly of end-joining complexes requires interaction between Ku70/80 and XRCC4

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Cotranscriptional processes and their influence on genome stability.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

An antibody-based microarray assay for small RNA detection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The role of double-strand break repair — insights from human genetics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Hypomorphic mutation in hnRNP U results in post-implantation lethality

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Actin and hnRNP U cooperate for productive transcription by RNA polymerase II.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Selective inhibition of topoisomerase I and various steps of spliceosome assembly by diospyrin derivatives

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

DNA-dependent protein kinase and XRCC4-DNA ligase IV mobilization in the cell in response to DNA double strand breaks.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Arginine methylation of scaffold attachment factor A by heterogeneous nuclear ribonucleoprotein particle-associated PRMT1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Scaffold attachment factor A (SAF-A) is concentrated in inactive X chromosome territories through its RGG domain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Cleavage of cellular DNA by calicheamicin gamma1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

A proteomic approach to the identification of heterogeneous nuclear ribonucleoproteins as a new family of poly(ADP-ribose)-binding proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Studying protein dynamics in living cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Topoisomerase I-mediated DNA damage

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

High mobility of proteins in the mammalian cell nucleus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

Characterization of SAF-A, a novel nuclear DNA binding protein from HeLa cells with high affinity for nuclear matrix/scaffold attachment DNA elements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The DNA-damage response in human biology and disease

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

Involvement of Matrin 3 and SFPQ/NONO in the DNA damage response

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

Strong nucleic acid binding to the Escherichia coli RNase HI mutant with two arginine residues at the active site

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

Poly(ADP-ribose) binds to the splicing factor ASF/SF2 and regulates its phosphorylation by DNA topoisomerase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

Poly(ADP-ribosyl)ation of heterogeneous nuclear ribonucleoproteins modulates splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

Involvement of p54(nrb), a PSF partner protein, in DNA double-strand break repair and radioresistance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

Competition between the RNA transcript and the nontemplate DNA strand during R-loop formation in vitro: a nick can serve as a strong R-loop initiation site

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

ATM and ATR pathways signal alternative splicing of Drosophila TAF1 pre-mRNA in response to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

The DNA damage response pathway regulates the alternative splicing of the apoptotic mediator Bcl-x

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

Nuclear retention of ATM at sites of DNA double strand breaks

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132723

The Ewing Sarcoma Protein Regulates DNA Damage-Induced Alternative Splicing

28 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU601

21 January 2018

Identifiers

DOI

10.1093/NAR/GKU601

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

PubMed publication ID

25030905

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25030905%20AND%20SRC:MED&resulttype=core&format=json