(Q38095707)

28 August 2017

title

Transcription-replication encounters, consequences and genomic instability (English)

1 reference

28 August 2017

3

Evgeny Nudler

0 references

Monica Ballarino

object named as

Monica Ballarino

series ordinal

2

0 references

László Tora

object named as

Laszlo Tora

series ordinal

4

0 references

author name string

Anne Helmrich

series ordinal

1

1 reference

28 August 2017

language of work or name

1 reference

1 April 2013

1 reference

Nature Structural & Molecular Biology

28 August 2017

published in

1 reference

28 August 2017

volume

20

1 reference

28 August 2017

issue

4

1 reference

28 August 2017

page(s)

412-418

1 reference

Independence of replisomes in Escherichia coli chromosomal replication

28 August 2017

cites work

1 reference

Transcription through the roadblocks: the role of RNA polymerase cooperation

21 January 2018

1 reference

Cooperation between translating ribosomes and RNA polymerase in transcription elongation

21 January 2018

1 reference

Consequences of replication fork movement through transcription units in vivo

21 January 2018

1 reference

The conflict between DNA replication and transcription

21 January 2018

1 reference

Linking RNA polymerase backtracking to genome instability in E. coli

21 January 2018

1 reference

A genomewide oscillation in transcription gates DNA replication and cell cycle

21 January 2018

1 reference

Genome-wide oscillation of transcription in yeast.

21 January 2018

1 reference

A genome-wide transcriptional analysis of the mitotic cell cycle

21 January 2018

1 reference

Segregation of transcription and replication sites into higher order domains

21 January 2018

1 reference

Global reorganization of replication domains during embryonic stem cell differentiation

21 January 2018

1 reference

In vivo dynamics of RNA polymerase II transcription.

21 January 2018

1 reference

Genomics and gene transcription kinetics in yeast

21 January 2018

1 reference

Rates of in situ transcription and splicing in large human genes

21 January 2018

1 reference

Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae

21 January 2018

1 reference

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription

21 January 2018

1 reference

Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes

21 January 2018

1 reference

Co-orientation of replication and transcription preserves genome integrity

21 January 2018

1 reference

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

21 January 2018

1 reference

When polymerases collide: replication and the transcriptional organization of the E. coli chromosome

21 January 2018

1 reference

Characterization of the pea rDNA replication fork barrier: putative cis-acting and trans-acting factors

21 January 2018

1 reference

Developmental regulation of replication fork pausing in Xenopus laevis ribosomal RNA genes.

21 January 2018

1 reference

Developmental regulation of DNA replication: replication fork barriers and programmed gene amplification in Tetrahymena thermophila

21 January 2018

1 reference

Transcription termination factor TTF-I exhibits contrahelicase activity during DNA replication

21 January 2018

1 reference

Replication timing and transcriptional control: beyond cause and effect--part II.

21 January 2018

1 reference

Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

21 January 2018

1 reference

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states

21 January 2018

1 reference

Replication timing of the human genome

21 January 2018

1 reference

Coordinate control and selective expression of the full complement of replication-dependent histone H4 genes in normal and cancer cells

21 January 2018

1 reference

DNA replication initiates at different sites in early and late S phase within human ribosomal RNA genes

21 January 2018

1 reference

DNA replication initiation patterns and spatial dynamics of the human ribosomal RNA gene loci

21 January 2018

1 reference

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

21 January 2018

1 reference

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

21 January 2018

1 reference

Genome-wide depletion of replication initiation events in highly transcribed regions

21 January 2018

1 reference

Mcm1 promotes replication initiation by binding specific elements at replication origins

21 January 2018

1 reference

Specification of a DNA replication origin by a transcription complex.

21 January 2018

1 reference

Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

21 January 2018

1 reference

Nuclear transcription is essential for specification of mammalian replication origins

21 January 2018

1 reference

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site

21 January 2018

1 reference

Recruitment of transcription complexes to the beta-globin gene locus in vivo and in vitro

21 January 2018

1 reference

Impairment of replication fork progression mediates RNA polII transcription-associated recombination

21 January 2018

1 reference

Transcription-dependent recombination and the role of fork collision in yeast rDNA.

21 January 2018

1 reference

RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

21 January 2018

1 reference

Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription.

21 January 2018

1 reference

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis

21 January 2018

1 reference

The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes

21 January 2018

1 reference

The transcription factor DksA prevents conflicts between DNA replication and transcription machinery

21 January 2018

1 reference

RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription

21 January 2018

1 reference

RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability

21 January 2018

1 reference

Transcription termination maintains chromosome integrity

21 January 2018

1 reference

Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex

21 January 2018

1 reference

Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability

21 January 2018

1 reference

The complex basis underlying common fragile site instability in cancer

21 January 2018

1 reference

Common fragile sites are conserved features of human and mouse chromosomes and relate to large active genes

21 January 2018

1 reference

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells

21 January 2018

1 reference

Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis.

21 January 2018

1 reference

Replication fork reversal after replication-transcription collision.

21 January 2018

1 reference

RNA polymerase backtracking in gene regulation and genome instability

21 January 2018

1 reference

Transcript cleavage factors from E. coli.

21 January 2018

1 reference

GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming

21 January 2018

1 reference

Role of DNA bubble rewinding in enzymatic transcription termination

21 January 2018

1 reference

R-loop-mediated genomic instability is caused by impairment of replication fork progression

21 January 2018

1 reference

R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants

21 January 2018

1 reference

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination

21 January 2018

1 reference

Yeast Sen1 helicase protects the genome from transcription-associated instability.

21 January 2018

1 reference

R loops stimulate genetic instability of CTG.CAG repeats

21 January 2018

1 reference

Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeats

21 January 2018

1 reference

A persistent RNA.DNA hybrid formed by transcription of the Friedreich ataxia triplet repeat in live bacteria, and by T7 RNAP in vitro

21 January 2018

1 reference

Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

21 January 2018

1 reference

The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.

21 January 2018

1 reference

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

21 January 2018

1 reference

Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence

21 January 2018

1 reference

Initiation of bacteriophage T4 DNA replication and replication fork dynamics: a review in the Virology Journal series on bacteriophage T4 and its relatives

21 January 2018

1 reference

The S-phase checkpoint is required to respond to R-loops accumulated in THO mutants

21 January 2018

1 reference

Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription

21 January 2018

1 reference

The replisome uses mRNA as a primer after colliding with RNA polymerase

21 January 2018

1 reference

Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes

21 January 2018

1 reference

RNA polymerase II collision interrupts convergent transcription

21 January 2018

1 reference

The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo

21 January 2018

1 reference

Co-directional replication-transcription conflicts lead to replication restart

21 January 2018

1 reference

Functional Transcription Elongation Complexes from Synthetic RNA-DNA Bubble Duplexes

21 January 2018

1 reference

Properties of the T4 bacteriophage DNA replication apparatus: The T4 dda DNA helicase is required to pass a bound RNA polymerase molecule

21 January 2018

1 reference

DNA replication fork pause sites dependent on transcription

21 January 2018

1 reference

Co-localization of polar replication fork barriers and rRNA transcription terminators in mouse rDNA

31 March 2020

1 reference

Transition in specification of embryonic metazoan DNA replication origins

31 March 2020

1 reference

Perturbation of the activity of replication origin by meiosis-specific transcription

31 March 2020

1 reference

Transcription as a source of genome instability

31 March 2020

1 reference

Replication-transcription conflicts in bacteria.

31 March 2020

1 reference

Transcription-induced deletions in Escherichia coli plasmids

31 March 2020

1 reference

p53 is activated in response to disruption of the pre-mRNA splicing machinery.

31 March 2020

1 reference

Direct restart of a replication fork stalled by a head-on RNA polymerase

31 March 2020

1 reference

Single-allele analysis of transcription kinetics in living mammalian cells

31 March 2020

1 reference

The Escherichia coli preprimosome and DNA B helicase can form replication forks that move at the same rate.

31 March 2020

1 reference

12 December 2020

Gene profiling of cell cycle progression through S-phase reveals sequential expression of genes required for DNA replication and nucleosome assembly

1 reference

12 December 2020

RNA polymerase II transcription is concentrated outside replication domains throughout S-phase

1 reference

12 December 2020

Increased replication initiation and conflicts with transcription underlie Cyclin E-induced replication stress

1 reference

12 December 2020

Transcription induces the formation of a stable RNA.DNA hybrid in the immunoglobulin alpha switch region.

1 reference

12 December 2020

Identifiers

DOI

10.1038/NSMB.2543

1 reference

28 August 2017

1 reference