(Q34074865)

30 July 2017

title

POPISK: T-cell reactivity prediction using support vector machines and string kernels (English)

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30 July 2017

main subject

support vector machine

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4

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30 July 2017

2

Matthias Ziehm

1 reference

30 July 2017

Andreas Kämper

3

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Chun-Wei Tung

object named as

Chun-Wei Tung

series ordinal

1

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author name string

Shinn-Ying Ho

series ordinal

5

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30 July 2017

publication date

15 November 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

446

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describes a project that uses

30 July 2017

support vector machine

1 reference

Towards in silico design of epitope-based vaccines

inferred from title

cites work

1 reference

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5 July 2018

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5 July 2018

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Prediction of HLA-DQ8beta cell peptidome using a computational program and its relationship to autoreactive T cells

5 July 2018

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5 July 2018

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Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance

5 July 2018

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5 July 2018

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HIV-1 coreceptor usage prediction without multiple alignments: an application of string kernels

5 July 2018

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5 July 2018

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5 July 2018

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Predicting linear B-cell epitopes using string kernels

5 July 2018

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Efficient peptide-MHC-I binding prediction for alleles with few known binders.

5 July 2018

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5 July 2018

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5 July 2018

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POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties

5 July 2018

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Methods and protocols for prediction of immunogenic epitopes

5 July 2018

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SVRMHC prediction server for MHC-binding peptides

5 July 2018

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Virus-epitope vaccine design: informatic matching the HLA-I polymorphism to the virus genome.

5 July 2018

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SVMHC: a server for prediction of MHC-binding peptides

5 July 2018

1 reference

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Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

5 July 2018

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Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models

5 July 2018

1 reference

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Bias in error estimation when using cross-validation for model selection

5 July 2018

1 reference

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BALLView: an object-oriented molecular visualization and modeling framework

5 July 2018

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BALLView: a tool for research and education in molecular modeling

5 July 2018

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Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences

5 July 2018

1 reference

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Integrated modeling of the major events in the MHC class I antigen processing pathway

5 July 2018

1 reference

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Structural and kinetic basis for heightened immunogenicity of T cell vaccines

5 July 2018

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The immune epitope database and analysis resource: from vision to blueprint

5 July 2018

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Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

5 July 2018

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A structural basis for immunodominant human T cell receptor recognition

5 July 2018

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Prediction of MHC class I binding peptides, using SVMHC

5 July 2018

1 reference

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Structural and thermodynamic correlates of T cell signaling

5 July 2018

1 reference

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Structural, biochemical, and biophysical studies of HLA-A2/altered peptide ligands binding to viral-peptide-specific human T-cell receptors

5 July 2018

1 reference

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SYFPEITHI: database for MHC ligands and peptide motifs

5 July 2018

1 reference

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5 July 2018

The Protein Data Bank

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Four A6-TCR/peptide/HLA-A2 structures that generate very different T cell signals are nearly identical

5 July 2018

1 reference

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5 July 2018

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Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

5 July 2018

1 reference

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Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

5 July 2018

1 reference

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Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

Atomic structure of a human MHC molecule presenting an influenza virus peptide

5 July 2018

1 reference

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Amino acid properties and side-chain orientation in proteins: A cross correlation approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

Modeling the adaptive immune system: predictions and simulations

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

PAProC: a prediction algorithm for proteasomal cleavages available on the WWW.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Prediction of proteasome cleavage motifs by neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

SYFPEITHI: database for searching and T-cell epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Prediction of peptide-MHC binding using profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

In silico prediction of peptide-MHC binding affinity using SVRMHC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

DynaPred: a structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Definition of supertypes for HLA molecules using clustering of specificity matrices.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Using multidimensional patterns of amino acid attributes for QSAR analysis of peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

In silico quantitative prediction of peptides binding affinity to human MHC molecule: an intuitive quantitative structure-activity relationship approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Analysis of peptide-protein binding using amino acid descriptors: prediction and experimental verification for human histocompatibility complex HLA-A0201.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

ProLoc: prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

Efficient MHC class I-peptide binding is required but does not ensure MHC class I-restricted immunogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-12-446

A novel Locally Linear Embedding and Wavelet Transform based encoding method for prediction of MHC-II binding affinity.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

Impact of HLA-B alleles, epitope binding affinity, functional avidity, and viral coinfection on the immunodominance of virus-specific CTL responses

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

RASE: recognition of alternatively spliced exons in C.elegans.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

MAPPP: MHC class I antigenic peptide processing prediction.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228774

Amino acid side chain parameters for correlation studies in biology and pharmacology

28 October 2018

1 reference

12 December 2020

Identification of T cell receptor recognition residues for a viral peptide presented by HLA B27

1 reference

12 December 2020

The ability of peptides to induce cytotoxic T cells in vitro does not strongly correlate with their affinity for the H-2Ld molecule: implications for vaccine design and immunotherapy

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12 December 2020

A set of new amino acid descriptors applied in prediction of MHC class I binding peptides

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12 December 2020

[TEpredict: software for T-cell epitope prediction]

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12 December 2020

Identifiers

DOI

10.1186/1471-2105-12-446

1 reference

journals/bmcbi/TungZKKH11

30 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1039686134

0 references

Fatcat ID

release_ijmpyfbfebghbmvgql445l3ofq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ijmpyfbfebghbmvgql445l3ofq

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3228774

1 reference

30 July 2017

1 reference