(Q34129420)

31 July 2017

title

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression (English)

1 reference

31 July 2017

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Populus trichocarpa

1 reference

5

Matteo Pellegrini

1 reference

31 July 2017

Henry D Priest

4

0 references

Kyle R Pomraning

object named as

Kyle R Pomraning

2

0 references

author name string

Kelly J Vining

1

1 reference

31 July 2017

Larry J Wilhelm

3

1 reference

31 July 2017

Todd C Mockler

6

1 reference

31 July 2017

Michael Freitag

7

1 reference

31 July 2017

Steven H Strauss

8

1 reference

31 July 2017

language of work or name

English

0 references

publication date

17 January 2012

1 reference

31 July 2017

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31 July 2017

volume

13

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31 July 2017

page(s)

27

1 reference

describes a project that uses

31 July 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Clone history shapes Populus drought responses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Differential expression analysis for sequence count data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Local DNA hypomethylation activates genes in rice endosperm

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Transgenerational response to stress in Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Transgenerational inheritance and resetting of stress-induced loss of epigenetic gene silencing in Arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Principles and challenges of genomewide DNA methylation analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Variations in DNA methylation, acetylated histone H4, and methylated histone H3 during Pinus radiata needle maturation in relation to the loss of in vitro organogenic capability

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Reprogramming the epigenome during germline and seed development

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Genome-wide demethylation of Arabidopsis endosperm.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Extensive demethylation of repetitive elements during seed development underlies gene imprinting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Acetylated H4 histone and genomic DNA methylation patterns during bud set and bud burst in Castanea sativa.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Epigenetic regulation of stress responses in plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Epigenetic regulation of transposable elements in plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Genome-wide high throughput analysis of DNA methylation in eukaryotes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Genome-scale DNA methylation maps of pluripotent and differentiated cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Mapping and quantifying mammalian transcriptomes by RNA-Seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

DNA methylation landscapes: provocative insights from epigenomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Epigenetic natural variation in Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Gardening the genome: DNA methylation in Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

DNA methylation and epigenetics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Role of transposable elements in heterochromatin and epigenetic control

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

The methylated component of the Neurospora crassa genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Arabidopsis MET1 cytosine methyltransferase mutants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

EUKARYOTIC CYTOSINE METHYLTRANSFERASES

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Hypermethylation of retrotransposons in the liverwort Marchantia paleacea var. diptera.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Determining the conservation of DNA methylation in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Cooperative activity of DNA methyltransferases for maintenance of symmetrical and non-symmetrical cytosine methylation in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Selective epigenetic control of retrotransposition in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Genomic DNA methylation-demethylation during aging and reinvigoration of Pinus radiata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Genomic DNA methylation of juvenile and mature Acacia mangium micropropagated in vitro with reference to leaf morphology as a phase change marker.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

DNA methylation during sexual embryogenesis and implications on the induction of somatic embryogenesis in Castanea sativa Miller.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

DNA methylation profiling of human chromosomes 6, 20 and 22

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Conservation and divergence of methylation patterning in plants and animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-27

Recognition and estimation of 5-methylcytosine in nucleic acids

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3298464

Distribution of 5-methylcytosine in pyrimidine sequences of deoxyribonucleic acids

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22251412

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The epigenetic landscape of plants

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22251412

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-27

1 reference

31 July 2017

1 reference

31 July 2017

1 reference