(Q34135038)

31 July 2017

Advantages and limitations of current network inference methods (English)

1 reference

31 July 2017

Kathleen Marchal

2

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author name string

Riet De Smet

series ordinal

1

1 reference

PubMed ID

20805835

31 July 2017

language of work or name

English

0 references

publication date

31 August 2010

1 reference

Nature Reviews Microbiology

31 July 2017

1 reference

31 July 2017

8

1 reference

31 July 2017

717-729

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31 July 2017

10

1 reference

https://scigraph.springernature.com/pub.10.1038/nrmicro2419

31 July 2017

0 references

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Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

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Escherichia coli acid resistance: tales of an amateur acidophile

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Module networks revisited: computational assessment and prioritization of model predictions.

31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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31 March 2020

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Towards environmental systems biology of Shewanella

31 March 2020

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TRANSCRIPTIONAL ANALYSIS OF THE UNICELLULAR, DIAZOTROPHIC CYANOBACTERIUM CYANOTHECE SP. ATCC 51142 GROWN UNDER SHORT DAY/NIGHT CYCLES(1).

31 March 2020

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31 March 2020

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31 March 2020

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Inferring Transcriptional Networks by Mining Omics Data

31 March 2020

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31 March 2020

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31 March 2020

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Revealing strengths and weaknesses of methods for gene network inference

31 March 2020

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Directing experimental biology: a case study in mitochondrial biogenesis

31 March 2020

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Lessons from the DREAM2 Challenges

31 March 2020

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BRNI: Modular analysis of transcriptional regulatory programs

31 March 2020

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Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

31 March 2020

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Application of 'next-generation' sequencing technologies to microbial genetics

31 March 2020

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Experimental approaches for the discovery and characterization of regulatory small RNA.

31 March 2020

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The intricate world of riboswitches

31 March 2020

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Protein occupancy landscape of a bacterial genome

31 March 2020

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Genetics of global gene expression

31 March 2020

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Mapping complex disease traits with global gene expression

31 March 2020

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Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli

31 March 2020

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Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

31 March 2020

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Adaptive prediction of environmental changes by microorganisms.

31 March 2020

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Predictive behavior within microbial genetic networks

31 March 2020

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Modularity and interactions in the genetics of gene expression

31 March 2020

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Learning a prior on regulatory potential from eQTL data

31 March 2020

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Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification

31 March 2020

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Understanding gene sequence variation in the context of transcription regulation in yeast

31 March 2020

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Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

31 March 2020

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Genome evolution and adaptation in a long-term experiment with Escherichia coli

31 March 2020

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Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations

31 March 2020

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The landscape of genetic complexity across 5,700 gene expression traits in yeast

31 March 2020

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Evolvability and hierarchy in rewired bacterial gene networks

31 March 2020

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Systems biology as a foundation for genome-scale synthetic biology

31 March 2020

1 reference

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Characterizing regulatory path motifs in integrated networks using perturbational data

31 March 2020

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Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2419

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2419

A data integration methodology for systems biology: experimental verification

31 March 2020

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A probabilistic functional network of yeast genes

31 March 2020

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eQED: an efficient method for interpreting eQTL associations using protein networks

31 March 2020

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Network component analysis: reconstruction of regulatory signals in biological systems

31 March 2020

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Inferring genetic networks and identifying compound mode of action via expression profiling

31 March 2020

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Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

31 March 2020

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Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.

31 March 2020

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Transcription factor distribution in Escherichia coli: studies with FNR protein.

31 March 2020

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Extracting conserved gene expression motifs from gene expression data.

31 March 2020

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12 December 2020

Biclustering of expression data

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12 December 2020

How to infer gene networks from expression profiles

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12 December 2020

The Inferelator 2.0: a scalable framework for reconstruction of dynamic regulatory network models.

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12 December 2020

Identifiers

DOI

10.1038/NRMICRO2419

1 reference

PubMed ID

20805835

Dimensions Publication ID

31 July 2017

0 references

1 reference

PubMed ID

20805835