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Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis.
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Europe PubMed Central
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3351166
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
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20 January 2020
title
Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis
(English)
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PMCID
3351166
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
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20 January 2020
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data analysis
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Marek Żywicki
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Marek Zywicki
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Europe PubMed Central
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3351166
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
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20 January 2020
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Europe PubMed Central
PubMed ID
22266655
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31 July 2017
Kamilla Bakowska-Zywicka
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3351166
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20 January 2020
Norbert Polacek
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Norbert Polacek
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3351166
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
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20 January 2020
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PubMed ID
22266655
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31 July 2017
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English
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20 January 2012
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Europe PubMed Central
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3351166
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20 January 2020
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Nucleic Acids Research
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3351166
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
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20 January 2020
volume
40
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3351166
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20 January 2020
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9
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20 January 2020
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4013-4024
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3351166
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20 January 2020
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Creative Commons Attribution-NonCommercial 3.0 Unported
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4 October 2016
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cites work
New methods for next generation sequencing based microRNA expression profiling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
The UCSC Genome Browser database: update 2011
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
DSAP: deep-sequencing small RNA analysis pipeline
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
RNPomics: defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
BEDTools: a flexible suite of utilities for comparing genomic features
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
In-depth cDNA library sequencing provides quantitative gene expression profiling in cancer biomarker discovery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Evidence for human microRNA-offset RNAs in small RNA sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
The Sequence Alignment/Map format and SAMtools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Transcript length bias in RNA-seq data confounds systems biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
TopHat: discovering splice junctions with RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
snoRNA, a novel precursor of microRNA in Giardia lamblia
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
High-resolution mapping of copy-number alterations with massively parallel sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Ensembl 2009
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
A human snoRNA with microRNA-like functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Alternative isoform regulation in human tissue transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
tRNA cleavage is a conserved response to oxidative stress in eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Chum-RNA allows preparation of a high-quality cDNA library from a single-cell quantity of mRNA without PCR amplification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Mapping and quantifying mammalian transcriptomes by RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
The transcriptional landscape of the yeast genome defined by RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Hidden layers of human small RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Discovering microRNAs from deep sequencing data using miRDeep
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Experimental approaches to identify non-coding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Repair-independent chromatin assembly onto active ribosomal genes in yeast after UV irradiation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
PatMatch: a program for finding patterns in peptide and nucleotide sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Non-coding RNAs: hope or hype?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
One-step affinity purification of the yeast ribosome and its associated proteins and mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Non-coding RNAs: the architects of eukaryotic complexity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Remodeling of yeast genome expression in response to environmental changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Genomic expression programs in the response of yeast cells to environmental changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
SnoRNA U21 is also intron-encoded in Drosophila melanogaster but in a different host-gene as compared to warm-blooded vertebrates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
5 July 2018
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3351166
retrieved
28 October 2018
Stressing out over tRNA cleavage
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22266655
retrieved
12 December 2020
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DOI
10.1093/NAR/GKS020
1 reference
stated in
Europe PubMed Central
PMCID
3351166
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
PMCID
3351166
1 reference
stated in
Europe PubMed Central
PMCID
3351166
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
PubMed ID
22266655
1 reference
stated in
Europe PubMed Central
PMCID
3351166
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22266655%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
ResearchGate publication ID
221767952
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