(Q34148377)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Signal sensory systems that impact σ⁵⁴ -dependent transcription (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

author name string

Victoria Shingler

series ordinal

1

1 reference

31 July 2017

publication date

5 November 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

FEMS Microbiology Reviews

15 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

volume

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

page(s)

425-440

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21054445%20AND%20SRC:MED&resulttype=core&format=json

Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo.

15 January 2020

cites work

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Global gene expression profiling in Escherichia coli K12. The effects of integration host factor

21 January 2018

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Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulation

21 January 2018

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Concerted inhibition of the transcriptional activation functions of the enhancer-binding protein NIFA by the anti-activator NIFL.

21 January 2018

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Compilation and analysis of sigma(54)-dependent promoter sequences

21 January 2018

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Receiver domains control the active-state stoichiometry of Aquifex aeolicus sigma54 activator NtrC4, as revealed by electrospray ionization mass spectrometry

21 January 2018

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Look, no hands! Unconventional transcriptional activators in bacteria.

21 January 2018

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The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription.

21 January 2018

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sigma54-promoter discrimination and regulation by ppGpp and DksA.

21 January 2018

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Active recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and alphaCTD.

21 January 2018

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Super DksAs: substitutions in DksA enhancing its effects on transcription initiation

21 January 2018

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Organization of an activator-bound RNA polymerase holoenzyme

21 January 2018

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A bacterial ATP-dependent, enhancer binding protein that activates the housekeeping RNA polymerase

21 January 2018

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The regulation of bacterial transcription initiation

21 January 2018

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Protein-DNA interactions that govern AAA+ activator-dependent bacterial transcription initiation.

21 January 2018

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Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein

21 January 2018

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ATP ground- and transition states of bacterial enhancer binding AAA+ ATPases support complex formation with their target protein, sigma54.

21 January 2018

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Positive and negative effects of DNA bending on activation of transcription from a distant site

21 January 2018

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ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms.

21 January 2018

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The phage-shock-protein response.

21 January 2018

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Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase

21 January 2018

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The structural basis for regulated assembly and function of the transcriptional activator NtrC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Growth phase variation of integration host factor level in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Negative regulation of AAA + ATPase assembly by two component receiver domains: a transcription activation mechanism that is conserved in mesophilic and extremely hyperthermophilic bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Structural Basis of DNA Recognition by the Alternative Sigma-factor, σ54

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

A protein-induced DNA bend increases the specificity of a prokaryotic enhancer-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Molecular determinants for PspA-mediated repression of the AAA transcriptional activator PspF.

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Repression of the Klebsiella aerogenes nac promoter

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Crl facilitates RNA polymerase holoenzyme formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The role of the interdomain B linker in the activation of the XylR protein of Pseudomonas putida.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Increased RNA polymerase availability directs resources towards growth at the expense of maintenance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Advances in bacterial promoter recognition and its control by factors that do not bind DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Structure of the RNA Polymerase Core-Binding Domain of σ54 Reveals a Likely Conformational Fracture Point

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Effector-mediated stimulation of ATPase activity by the sigma 54-dependent transcriptional activator FHLA from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Protein-induced DNA bending clarifies the architectural organization of the sigma54-dependent glnAp2 promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Enhancer-binding proteins HrpR and HrpS interact to regulate hrp-encoded type III protein secretion in Pseudomonas syringae strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Mass spectrometry of Escherichia coli RNA polymerase: interactions of the core enzyme with sigma70 and Rsd protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Functional modulation of Escherichia coli RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Regulation of sigma factor competition by the alarmone ppGpp

21 January 2018

1 reference

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sigma54-RNA polymerase controls sigma70-dependent transcription from a non-overlapping divergent promoter.

21 January 2018

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An intramolecular route for coupling ATPase activity in AAA+ proteins for transcription activation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

A lower-order oligomer form of phage shock protein A (PspA) stably associates with the hexameric AAA(+) transcription activator protein PspF for negative regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

PspF and IHF bind co-operatively in the psp promoter-regulatory region of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Structure of a transiently phosphorylated switch in bacterial signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Escherichia coli DksA binds to Free RNA polymerase with higher affinity than to RNA polymerase in an open complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Interplay between CRP-cAMP and PII-Ntr systems forms novel regulatory network between carbon metabolism and nitrogen assimilation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The Escherichia coli regulator of sigma 70 protein, Rsd, can up-regulate some stress-dependent promoters by sequestering sigma 70.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Role of conserved cysteine residues in Herbaspirillum seropedicae NifA activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

An active role for a structured B-linker in effector control of the sigma54-dependent regulator DmpR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The sigma-factor FliA, ppGpp and DksA coordinate transcriptional control of the aer2 gene of Pseudomonas putida.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Two-component signaling in the AAA + ATPase DctD: binding Mg2+ and BeF3- selects between alternate dimeric states of the receiver domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Crystal Structure of the Escherichia coli Regulator of σ70, Rsd, in Complex with σ70 Domain 4

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

DksA potentiates direct activation of amino acid promoters by ppGpp

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Solution structure of the DNA-binding domain of NtrC with three alanine substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Integration host factor suppresses promiscuous activation of the sigma 54-dependent promoter Pu of Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

A global view of Escherichia coli Rsd protein and its interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

TyrR protein of Escherichia coli and its role as repressor and activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Activation and repression of a sigmaN-dependent promoter naturally lacking upstream activation sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Oligomerization of NTRC at the glnA enhancer is required for transcriptional activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

21 January 2018

(p)ppGpp: still magical?

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Structural insights into the activity of enhancer-binding proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Structural basis of the nucleotide driven conformational changes in the AAA+ domain of transcription activator PspF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Bacterial enhancer-binding proteins: unlocking sigma54-dependent gene transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Novel physiological modulation of the Pu promoter of TOL plasmid: negative regulatory role of the TurA protein of Pseudomonas putida in the response to suboptimal growth temperatures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The bacterial enhancer-binding protein NtrC as a molecular machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Allosteric control of Escherichia coli rRNA promoter complexes by DksA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Crystal structure of the central and C-terminal domain of the sigma(54)-activator ZraR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Structures and organisation of AAA+ enhancer binding proteins in transcriptional activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Sensor I threonine of the AAA+ ATPase transcriptional activator PspF is involved in coupling nucleotide triphosphate hydrolysis to the restructuring of sigma 54-RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism

21 January 2018

1 reference

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Integrated regulation in response to aromatic compounds: from signal sensing to attractive behaviour

21 January 2018

1 reference

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The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Domain architectures of sigma54-dependent transcriptional activators

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Properties of RNA polymerase bypass mutants: implications for the role of ppGpp and its co-factor DksA in controlling transcription dependent on sigma54.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

In vivo and in vitro effects of integration host factor at the DmpR-regulated sigma(54)-dependent Po promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Sensor complexes regulating two-component signal transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Essential roles of three enhancer sites in sigma54-dependent transcription by the nitric oxide sensing regulatory protein NorR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The AAA+ superfamily--a myriad of motions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigmas activity and levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

In vivo UV laser footprinting of the Pseudomonas putidasigma 54Pu promoter reveals that integration host factor couples transcriptional activity to growth phase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

CRP interacts with promoter-bound sigma54 RNA polymerase and blocks transcriptional activation of the dctA promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Studies of the Escherichia coli Rsd-sigma70 complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Conservation of sigma-core RNA polymerase proximity relationships between the enhancer-independent and enhancer-dependent sigma classes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The regulatory N-terminal region of the aromatic-responsive transcriptional activator DmpR constrains nucleotide-triggered multimerisation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Purification and characterization of the AAA+ domain of Sinorhizobium meliloti DctD, a sigma54-dependent transcriptional activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Genome update: sigma factors in 240 bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

Recruitment of σ54-RNA Polymerase to thePuPromoter ofPseudomonas putidathrough Integration Host Factor-mediated Positioning Switch of α Subunit Carboxyl-terminal Domain on an UP-like Element

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X

A non-haem iron centre in the transcription factor NorR senses nitric oxide

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1574-6976.2010.00255.X