(Q34169643)

31 July 2017

Spontaneous transmembrane helix insertion thermodynamically mimics translocon-guided insertion (English)

1 reference

31 July 2017

transmembrane protein

0 references

author

Gunnar von Heijne

5

1 reference

31 July 2017

B A Wallace

4

0 references

Stephen H. White

object named as

Stephen H White

6

0 references

Martin B Ulmschneider

object named as

Martin B Ulmschneider

1

0 references

author name string

Jakob P Ulmschneider

2

1 reference

PubMed ID

25204588

31 July 2017

Nina Schiller

3

1 reference

PubMed ID

25204588

31 July 2017

language of work or name

English

0 references

publication date

10 September 2014

1 reference

31 July 2017

Nature Communications

1 reference

31 July 2017

5

1 reference

31 July 2017

4863

1 reference

https://scigraph.springernature.com/pub.10.1038/ncomms5863

31 July 2017

0 references

cites work

On the nature of the apparent free energy of inserting amino acids into membrane through the translocon

1 reference

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Buried lysine, but not arginine, titrates and alters transmembrane helix tilt.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Structure and 3D arrangement of endoplasmic reticulum membrane-associated ribosomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Mechanisms of Sec61/SecY-mediated protein translocation across membranes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Hydrogen-bond energetics drive helix formation in membrane interfaces

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Cryo-EM structure of the ribosome–SecYE complex in the membrane environment

5 July 2018

1 reference

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Free-energy cost for translocon-assisted insertion of membrane proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Assembly of bacterial inner membrane proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

On the energetics of translocon-assisted insertion of charged transmembrane helices into membranes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Peptide partitioning properties from direct insertion studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Structure and hydration of membranes embedded with voltage-sensing domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Insertion of short transmembrane helices by the Sec61 translocon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Single Copies of Sec61 and TRAP Associate with a Nontranslating Mammalian Ribosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

How translocons select transmembrane helices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Distribution of amino acids in a lipid bilayer from computer simulations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Is arginine charged in a membrane?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Position-resolved free energy of solvation for amino acids in lipid membranes from molecular dynamics simulations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Folding amphipathic helices into membranes: amphiphilicity trumps hydrophobicity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Partitioning of amino acid side chains into lipid bilayers: results from computer simulations and comparison to experiment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

On the thermodynamic stability of a charged arginine side chain in a transmembrane helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Canonical sampling through velocity rescaling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Protein translocation by the Sec61/SecY channel

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Transmembrane helices before, during, and after insertion

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Recognition of transmembrane helices by the endoplasmic reticulum translocon.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Structure, location, and lipid perturbations of melittin at the membrane interface

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Membrane protein folding and stability: physical principles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

An amphipathic alpha-helix at a membrane interface: a structural study using a novel X-ray diffraction method.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Folding of beta-sheet membrane proteins: a hydrophobic hexapeptide model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

How to measure and predict the molar absorption coefficient of a protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

A simple method for displaying the hydropathic character of a protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Method of oriented circular dichroism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161982

Energetics, stability, and prediction of transmembrane helices

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Molecular code for transmembrane-helix recognition by the Sec61 translocon

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Designing transmembrane alpha-helices that insert spontaneously

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

The role of lipid composition for insertion and stabilization of amino acids in membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Folding of amphipathic alpha-helices on membranes: energetics of helix formation by melittin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Calcium fluoride micro cells for synchrotron radiation circular dichroism spectroscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Protein characterisation by synchrotron radiation circular dichroism spectroscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

GROMACS: A message-passing parallel molecular dynamics implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Titratable Amino Acid Solvation in Lipid Membranes as a Function of Protonation State

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

Comparison of the conformation and orientation of alamethicin and melittin in lipid membranes

21 January 2018

1 reference

12 December 2020

United Atom Lipid Parameters for Combination with the Optimized Potentials for Liquid Simulations All-Atom Force Field

1 reference

12 December 2020

Slow translocon gating causes cytosolic exposure of transmembrane and lumenal domains during membrane protein integration

1 reference

12 December 2020

Mechanism and kinetics of peptide partitioning into membranes from all-atom simulations of thermostable peptides

1 reference

12 December 2020

Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5863

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NCOMMS5863

1 reference

Dimensions Publication ID

31 July 2017

0 references

0 references

1 reference

31 July 2017

1 reference

PubMed ID

25204588