(Q34204436)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

title

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

0 references

1 reference

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Sagar Chhangawala

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

29

Christopher E Mason

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Natalia Garcia-Reyero

19

object named as

Natàlia Garcia-Reyero

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

author name string

Sheng Li

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Scott W Tighe

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Charles M Nicolet

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Deborah Grove

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

William Farmerie

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Agnes Viale

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Chris Wright

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Peter A Schweitzer

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Yuan Gao

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Dewey Kim

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Joe Boland

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Belynda Hicks

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Ryan Kim

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Nadereh Jafari

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Nalini Raghavachari

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Jorge Gandara

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Cynthia Hendrickson

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

David Roberson

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Jeffrey Rosenfeld

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Todd Smith

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Jason G Underwood

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

May Wang

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Paul Zumbo

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Don A Baldwin

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

George S Grills

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

publication date

24 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

volume

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

page(s)

915-925

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

13 March 2020

1 reference

A single-molecule long-read survey of the human transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

The new sequencer on the block: comparison of Life Technology's Proton sequencer to an Illumina HiSeq for whole-exome sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Comparative analysis of RNA sequencing methods for degraded or low-input samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Comparison of sequencing platforms for single nucleotide variant calls in a human sample

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

An integrated map of genetic variation from 1,092 human genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

STAR: ultrafast universal RNA-seq aligner

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Comparison of next-generation sequencing systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RSeQC: quality control of RNA-seq experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Performance comparison of benchtop high-throughput sequencing platforms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Accurate RT-qPCR gene expression analysis on cell culture lysates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

GC-content normalization for RNA-Seq data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Differential expression in RNA-seq: a matter of depth

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Synthetic spike-in standards for RNA-seq experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Sequencing technologies and genome sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RNA-seq: technical variability and sampling.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Field guide to next‐generation DNA sequencers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RNA-sequence analysis of human B-cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Analysis and design of RNA sequencing experiments for identifying isoform regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Impact of RNA degradation on gene expression profiling.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Biases in Illumina transcriptome sequencing caused by random hexamer priming

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RNA-Seq: a method for comprehensive transcriptome analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Alternative isoform regulation in human tissue transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Capturing heterogeneity in gene expression studies by surrogate variable analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Moderated statistical tests for assessing differences in tag abundance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Assessing the accuracy of prediction algorithms for classification: an overview

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4167418

Identification of novel transcripts in annotated genomes using RNA-Seq

5 July 2018

1 reference

A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

21 January 2018

1 reference

Evaluation of DNA microarray results with quantitative gene expression platforms

21 January 2018

1 reference

Advancing RNA-Seq analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25150835

12 December 2020

inferred from PubMed ID database lookup

Formaldehyde substitute fixatives: effects on nucleic acid preservation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25150835

12 December 2020

inferred from PubMed ID database lookup

Research technologies: fulfilling the promise

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25150835

12 December 2020

inferred from PubMed ID database lookup

The pivotal regulatory landscape of RNA modifications

1 reference

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NBT.2972

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

PubMed publication ID

25150835

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25150835%20AND%20SRC:MED&resulttype=core&format=json