(Q34226580)

31 July 2017

A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins (English)

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31 July 2017

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computational biology

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Gautam Dantas

1

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David Baker

object named as

David Baker

series ordinal

5

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Brian Kuhlman

series ordinal

2

object named as

Brian Kuhlman

1 reference

31 July 2017

David Callender

3

1 reference

PubMed ID

12948494

31 July 2017

Michelle Wong

series ordinal

4

1 reference

PubMed ID

12948494

31 July 2017

language of work or name

English

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publication date

1 September 2003

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Journal of Molecular Biology

31 July 2017

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31 July 2017

332

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31 July 2017

449-460

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31 July 2017

2

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De novo protein design: fully automated sequence selection

31 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

De novo design of the hydrophobic cores of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Automated design of specificity in molecular recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

De novo protein design. I. In search of stability and specificity.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Computational de novo design, and characterization of an A(2)B(2) diiron protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Automatic protein design with all atom force-fields by exact and heuristic optimization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

High-resolution protein design with backbone freedom

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Design of bioelectronic interfaces by exploiting hinge-bending motions in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Computational design of an integrin I domain stabilized in the open high affinity conformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Native protein sequences are close to optimal for their structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Computer-based redesign of a protein folding pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Accurate computer-based design of a new backbone conformation in the second turn of protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Conversion of monomeric protein L to an obligate dimer by computational protein design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Effective energy function for proteins in solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Bayesian statistical analysis of protein side-chain rotamer preferences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Dominant forces in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Contribution of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Structure and stability of recombinant protein depend on the extra N-terminal methionine residue: S6 permutein from direct and fusion expression systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Thermodynamics and kinetics of folding of common-type acylphosphatase: comparison to the highly homologous muscle isoenzyme.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Evidence for a two-state transition in the folding process of the activation domain of human procarboxypeptidase A2.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Autocatalyzed protein folding.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Kinetics of Folding of the IgG Binding Domain of Peptostreptoccocal Protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Characterization of the free energy spectrum of peptostreptococcal protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

Structural and energetic consequences of disruptive mutations in a protein core

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900888-X

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0022-2836(03)00888-X

1 reference

31 July 2017

1 reference

PubMed ID

12948494