(Q34244324)

31 July 2017

title

Structure and operation of the DNA-translocating type I DNA restriction enzymes (English)

1 reference

31 July 2017

author

Wojciech Potrzebowski

Wojciech Potrzebowski

4

0 references

James E. Taylor

James E Taylor

2

0 references

William V. Nicholson

William Nicholson

5

0 references

Janusz Bujnicki

13

Janusz M Bujnicki

1 reference

31 July 2017

author name string

Christopher K Kennaway

1

1 reference

31 July 2017

Chun Feng Song

3

1 reference

31 July 2017

John H White

6

1 reference

31 July 2017

Anna Swiderska

7

1 reference

31 July 2017

Agnieszka Obarska-Kosinska

8

1 reference

31 July 2017

Philip Callow

9

1 reference

31 July 2017

Laurie P Cooper

10

1 reference

31 July 2017

Gareth A Roberts

11

1 reference

31 July 2017

Jean-Baptiste Artero

12

1 reference

31 July 2017

John Trinick

14

1 reference

31 July 2017

G Geoff Kneale

15

1 reference

31 July 2017

David T F Dryden

16

1 reference

31 July 2017

publication date

1 January 2012

1 reference

31 July 2017

1 reference

31 July 2017

volume

26

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31 July 2017

issue

1

1 reference

31 July 2017

page(s)

92-104

1 reference

Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI

31 July 2017

cites work

1 reference

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Recycling of protein subunits during DNA translocation and cleavage by Type I restriction-modification enzymes

6 July 2018

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An investigation of the structural requirements for ATP hydrolysis and DNA cleavage by the EcoKI Type I DNA restriction and modification enzyme

6 July 2018

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Structure of HsdS Subunit from Thermoanaerobacter tengcongensis Sheds Lights on Mechanism of Dynamic Opening and Closing of Type I Methyltransferase

6 July 2018

1 reference

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Fused eco29kIR- and M genes coding for a fully functional hybrid polypeptide as a model of molecular evolution of restriction-modification systems

6 July 2018

1 reference

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Architecture of the DNA polymerase B-proliferating cell nuclear antigen (PCNA)-DNA ternary complex

6 July 2018

1 reference

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Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA

6 July 2018

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Fusion of GFP to the M.EcoKI DNA methyltransferase produces a new probe of Type I DNA restriction and modification enzymes

6 July 2018

1 reference

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Structural and functional analysis of the engineered type I DNA methyltransferase EcoR124I(NT)

6 July 2018

1 reference

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Diversity of DNA methyltransferases that recognize asymmetric target sequences

6 July 2018

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REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

6 July 2018

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The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Structure of the motor subunit of type I restriction-modification complex EcoR124I

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Motor step size and ATP coupling efficiency of the dsDNA translocase EcoR124I.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Shape and subunit organisation of the DNA methyltransferase M.AhdI by small-angle neutron scattering

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Plasmid-encoded antirestriction protein ArdA can discriminate between type I methyltransferase and complete restriction-modification system.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

The biology of restriction and anti-restriction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

X-Ray Structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase Core and Its Complex with DNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Continuous assays for DNA translocation using fluorescent triplex dissociation: application to type I restriction endonucleases.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Initiation of translocation by Type I restriction-modification enzymes is associated with a short DNA extrusion

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Tracking EcoKI and DNA fifty years on: a golden story full of surprises

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Interaction of the ocr gene 0.3 protein of bacteriophage T7 with EcoKI restriction/modification enzyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Structure of Ocr from bacteriophage T7, a protein that mimics B-form DNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Translocation and specific cleavage of bacteriophage T7 DNA in vivo by EcoKI.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Analysis of the subunit assembly of the typeIC restriction-modification enzyme EcoR124I

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Protein-protein and protein-DNA interactions in the type I restriction endonuclease R.EcoR124I.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

A deletion mutant of the type IC restriction endonuclease EcoR1241 expressing a novel DNA specificity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Macroevolution by transposition: drastic modification of DNA recognition by a type I restriction enzyme following Tn5 transposition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

DNA-binding induces a major structural transition in a type I methyltransferase.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

A symmetrical model for the domain structure of type I DNA methyltransferases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Genetic recombination can generate altered restriction specificity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Host specificity of DNA produced by Escherichia coli, X. In vitro restriction of phage fd replicative form

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

DNA Restriction Enzyme from E. coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

The DNA restriction endonuclease of Escherichia coli B. I. Studies of the DNA translocation and the ATPase activities.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Model for how type I restriction enzymes select cleavage sites in DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Reassortment of DNA recognition domains and the evolution of new specificities.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Conservation of complex DNA recognition domains between families of restriction enzymes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Conservation of organization in the specificity polypeptides of two families of type I restriction enzymes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Negative staining of myosin molecules.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Increased protein flexibility leads to promiscuous protein-DNA interactions in type IC restriction-modification systems

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Purification and biochemical characterisation of theEcoR124 type I modification methylase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

A mutational analysis of DNA mimicry by ocr, the gene 0.3 antirestriction protein of bacteriophage T7.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

Is modification sufficient to protect a bacterial chromosome from a resident restriction endonuclease?

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

2001 Fred Griffith review lecture. Immigration control of DNA in bacteria: self versus non-self.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

The domains of a type I DNA methyltransferase. Interactions and role in recognition of DNA methylation.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3258970

On the structure and operation of type I DNA restriction enzymes

28 October 2018

1 reference

12 December 2020

Crystal structure of a putative type I restriction-modification S subunit from Mycoplasma genitalium

1 reference

12 December 2020

A Map of Protein-rRNA Distribution in the 70 SEscherichia coliRibosome

1 reference

12 December 2020

Probing the domain structure of the type IC DNA methyltransferase M.EcoR124I by limited proteolysis

1 reference

12 December 2020

Structural modelling of a type I DNA methyltransferase

1 reference

12 December 2020

The in vitro assembly of the EcoKI type I DNA restriction/modification enzyme and its in vivo implications

1 reference

12 December 2020

Assembly of EcoKI DNA methyltransferase requires the C-terminal region of the HsdM modification subunit

1 reference

12 December 2020

DNA structure: evidence from electron microscopy

1 reference

12 December 2020

DNA translocation by the restriction enzyme from E. coli K

1 reference

12 December 2020

Identifiers

DOI

10.1101/GAD.179085.111

1 reference

31 July 2017

1 reference

31 July 2017

1 reference