(Q34244974)

31 July 2017

title

Depletion of trypanosome CTR9 leads to gene expression defects (English)

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31 July 2017

main subject

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5 February 2019

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5 February 2019

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5 February 2019

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6 February 2019

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6 February 2019

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6 February 2019

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6 February 2019

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6 February 2019

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6 February 2019

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RNA polymerase-associated protein CDC73, putative (fragment)

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Abeer Fadda

6

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Christine Clayton

object named as

Christine Clayton

7

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author name string

Benard A Ouna

1

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31 July 2017

Benson Nyambega

2

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31 July 2017

Theresa Manful

3

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31 July 2017

Claudia Helbig

4

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31 July 2017

Matilda Males

5

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31 July 2017

Ouna, B.A.

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Nyambega, B.

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Manful, T.

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Helbig, C.

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Males, M.

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Fadda, A.

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Clayton, C.

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language of work or name

English

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publication date

20 April 2012

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31 July 2017

2013

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published in

PLOS One

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31 July 2017

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7

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31 July 2017

issue

4

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31 July 2017

page(s)

e34256

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Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

20 April 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Development of an efficient in vitro transcription system for bloodstream form Trypanosoma brucei reveals life cycle-independent functionality of class I transcription factor A.

28 July 2018

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Posttranscriptional control and the role of RNA-binding proteins in gene regulation in trypanosomatid protozoan parasites

28 July 2018

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The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation

28 July 2018

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28 July 2018

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TbISWI regulates multiple polymerase I (Pol I)-transcribed loci and is present at Pol II transcription boundaries in Trypanosoma brucei.

28 July 2018

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Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptome

28 July 2018

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The Paf1 complex represses ARG1 transcription in Saccharomyces cerevisiae by promoting histone modifications

28 July 2018

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28 July 2018

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Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae

28 July 2018

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System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

28 July 2018

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The PAF1 complex differentially regulates cardiomyocyte specification

28 July 2018

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Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

28 July 2018

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NLP is a novel transcription regulator involved in VSG expression site control in Trypanosoma brucei

28 July 2018

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Differential expression analysis for sequence count data

28 July 2018

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A TFIIH-associated mediator head is a basal factor of small nuclear spliced leader RNA gene transcription in early-diverged trypanosomes.

28 July 2018

1 reference

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The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution

28 July 2018

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Epigenetics and transcriptional control in African trypanosomes

28 July 2018

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Leo1 Subunit of the Yeast Paf1 Complex Binds RNA and Contributes to Complex Recruitment*

28 July 2018

1 reference

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Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids

28 July 2018

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Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites

28 July 2018

1 reference

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The RNA polymerase-associated factor 1 complex (Paf1C) directly increases the elongation rate of RNA polymerase I and is required for efficient regulation of rRNA synthesis.

28 July 2018

1 reference

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The PAF1 complex component Leo1 is essential for cardiac and neural crest development in zebrafish

28 July 2018

1 reference

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The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

The Paf1 complex: platform or player in RNA polymerase II transcription?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

The tumor suppressor, parafibromin, mediates histone H3 K9 methylation for cyclin D1 repression

28 July 2018

1 reference

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The non-canonical CTD of RNAP-II is essential for productive RNA synthesis in Trypanosoma brucei

28 July 2018

1 reference

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The role of deadenylation in the degradation of unstable mRNAs in trypanosomes

28 July 2018

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Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei

28 July 2018

1 reference

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The Paf1 complex is required for efficient transcription elongation by RNA polymerase I

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

The tumor suppressor Cdc73 functionally associates with CPSF and CstF 3' mRNA processing factors

28 July 2018

1 reference

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Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II.

28 July 2018

1 reference

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RNA polymerase transcription machinery in trypanosomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

Rtf1 is a multifunctional component of the Paf1 complex that regulates gene expression by directing cotranscriptional histone modification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

Characterization and developmentally regulated localization of the mitochondrial carrier protein homologue MCP6 from Trypanosoma brucei

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

The requirements for COMPASS and Paf1 in transcriptional silencing and methylation of histone H3 in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

Trypanosomal TBP functions with the multisubunit transcription factor tSNAP to direct spliced-leader RNA gene expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

RNA polymerase I transcribes procyclin genes and variant surface glycoprotein gene expression sites in Trypanosoma brucei

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

Exportin 1 mediates nuclear export of the kinetoplastid spliced leader RNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

The exosome of Trypanosoma brucei

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

The PARP promoter of Trypanosoma brucei is developmentally regulated in a chromosomal context.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets.

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

Defective nucleolar localization and dominant interfering properties of a parafibromin L95P missense mutant causing the hyperparathyroidism-jaw tumor syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

Uniform transitions of the general RNA polymerase II transcription complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

Immunoglobulin heavy chain gene regulation through polyadenylation and splicing competition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

Pause locally, splice globally

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

A doubly inducible system for RNA interference and rapid RNAi plasmid construction in Trypanosoma brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

The roles of intersubunit interactions in exosome stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

The Paf1 complex physically and functionally associates with transcription elongation factors in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

A domino effect in drug action: from metabolic assault towards parasite differentiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0034256

TbENF is an essential TbTFIIB-interacting trypanosomatid-specific factor

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3332058

A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22532828

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22532828

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0034256

1 reference

31 July 2017

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31 July 2017

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