(Q34249561)

31 July 2017

title

Multivariate inference of pathway activity in host immunity and response to therapeutics (English)

1 reference

31 July 2017

main subject

multivariate statistics

1 reference

Martin Jaeger

3

0 references

Mihai Netea

series ordinal

4

object named as

Mihai G Netea

1 reference

31 July 2017

5

Ramnik J Xavier

1 reference

31 July 2017

Gautam Goel

1

1 reference

31 July 2017

Kara L Conway

series ordinal

2

1 reference

31 July 2017

language of work or name

English

0 references

publication date

21 August 2014

1 reference

31 July 2017

number of pages

19

1 reference

based on heuristic

inferred from page(s)

published in

Nucleic Acids Research

1 reference

31 July 2017

volume

42

1 reference

31 July 2017

issue

16

1 reference

31 July 2017

page(s)

10288-10306

1 reference

Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

3 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection

28 July 2018

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28 July 2018

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Type 1 diabetes: translating mechanistic observations into effective clinical outcomes

28 July 2018

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Functional genomics identifies type I interferon pathway as central for host defense against Candida albicans

28 July 2018

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Comparison and evaluation of pathway-level aggregation methods of gene expression data

28 July 2018

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Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

28 July 2018

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The G protein-coupled taste receptor T1R1/T1R3 regulates mTORC1 and autophagy.

28 July 2018

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Identification of pathway deregulation--gene expression based analysis of consistent signal transduction.

28 July 2018

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Celiac disease: an immunological jigsaw

28 July 2018

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Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection

28 July 2018

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Wound healing of intestinal epithelial cells

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Identification of high-quality cancer prognostic markers and metastasis network modules

28 July 2018

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Heading down the wrong pathway: on the influence of correlation within gene sets

28 July 2018

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Butyrate utilization by the colonic mucosa in inflammatory bowel diseases: a transport deficiency

28 July 2018

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Butyrate-induced transcriptional changes in human colonic mucosa

28 July 2018

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Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets

28 July 2018

1 reference

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Identification of differential gene pathways with principal component analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Efficient colonic mucosal wound repair requires Trem2 signaling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Inferring pathway activity toward precise disease classification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Identification of key processes underlying cancer phenotypes using biologic pathway analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Domain-enhanced analysis of microarray data using GO annotations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Analyzing gene expression data in terms of gene sets: methodological issues

28 July 2018

1 reference

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Analysis of gene expression using gene sets discriminates cancer patients with and without late radiation toxicity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Role of Toll-like receptors in health and diseases of gastrointestinal tract

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Oncogenic pathway signatures in human cancers as a guide to targeted therapies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Pathway level analysis of gene expression using singular value decomposition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Signal transduction pathway profiling of individual tumor samples

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

CX3CR1-mediated dendritic cell access to the intestinal lumen and bacterial clearance

28 July 2018

1 reference

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A global test for groups of genes: testing association with a clinical outcome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Expression of mitochondrial HMGCoA synthase and glutaminase in the colonic mucosa is modulated by bacterial species

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Phosphatidylinositol 3-kinase mediates proliferative signals in intestinal epithelial cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

A comparison of gene set analysis methods in terms of sensitivity, prioritization and specificity

28 July 2018

1 reference

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A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis

28 October 2018

1 reference

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Differential expression analysis for pathways

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Personalizing medicine for autoimmune and inflammatory diseases

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Transcriptional analysis of the intestinal mucosa of patients with ulcerative colitis in remission reveals lasting epithelial cell alterations

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Tryptophan depletion and the kinase GCN2 mediate IFN-γ-induced autophagy.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Down-weighting overlapping genes improves gene set analysis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Camera: a competitive gene set test accounting for inter-gene correlation

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Decreased mucosal sulfide detoxification is related to an impaired butyrate oxidation in ulcerative colitis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Genetics and pathogenesis of inflammatory bowel disease

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Gene expression profiling and response signatures associated with differential responses to infliximab treatment in ulcerative colitis

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Candida albicans dampens host defense by downregulating IL-17 production.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Dietary histidine ameliorates murine colitis by inhibition of proinflammatory cytokine production from macrophages.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

HB-EGF enhances restitution after intestinal ischemia/reperfusion via PI3K/Akt and MEK/ERK1/2 activation.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Hotelling's T2 multivariate profiling for detecting differential expression in microarrays.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Towards precise classification of cancers based on robust gene functional expression profiles

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Aquaporin expression is downregulated in a murine model of colitis and in patients with ulcerative colitis, Crohn's disease and infectious colitis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Impaired butyrate oxidation in ulcerative colitis is due to decreased butyrate uptake and a defect in the oxidation pathway*

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4176341

Increased susceptibility to systemic candidiasis in interleukin-6 deficient mice 1

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25147207

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The accelerating effect of histamine on the cutaneous wound-healing process through the action of basic fibroblast growth factor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25147207

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU722

1 reference

31 July 2017

1 reference

31 July 2017

1 reference