(Q34330539)

1 August 2017

title

Encoding and decoding cellular information through signaling dynamics (English)

1 reference

1 August 2017

Jeremy E Purvis

1

1 reference

1 August 2017

Galit Lahav

series ordinal

2

1 reference

1 August 2017

language of work or name

English

0 references

publication date

1 February 2013

1 reference

1 August 2017

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1 August 2017

volume

152

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1 August 2017

issue

5

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1 August 2017

page(s)

945-956

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Dynamic response diversity of NFAT isoforms in individual living cells

1 August 2017

cites work

1 reference

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Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise

6 July 2018

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p53 dynamics control cell fate

6 July 2018

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Temporal coding of insulin action through multiplexing of the AKT pathway.

6 July 2018

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Lessons from mathematically modeling the NF-κB pathway

6 July 2018

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Pulsed feedback defers cellular differentiation

6 July 2018

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Signal-dependent dynamics of transcription factor translocation controls gene expression

6 July 2018

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The GDI-like solubilizing factor PDEδ sustains the spatial organization and signalling of Ras family proteins

6 July 2018

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Quantitative measurement of single cell dynamics.

6 July 2018

1 reference

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Imaging the coordination of multiple signalling activities in living cells

6 July 2018

1 reference

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Light-based feedback for controlling intracellular signaling dynamics.

6 July 2018

1 reference

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Stimulus-dependent dynamics of p53 in single cells

6 July 2018

1 reference

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Impulse control: temporal dynamics in gene transcription

6 July 2018

1 reference

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An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients

6 July 2018

1 reference

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Understanding the temporal codes of intra-cellular signals

6 July 2018

1 reference

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Pairwise network mechanisms in the host signaling response to coxsackievirus B3 infection

6 July 2018

1 reference

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Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing.

6 July 2018

1 reference

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Pairwise agonist scanning predicts cellular signaling responses to combinatorial stimuli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Signalling ballet in space and time

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Protein dynamics in drug combinations: a linear superposition of individual-drug responses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Dynamics and variability of ERK2 response to EGF in individual living cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Sustained oscillations of NF-kappaB produce distinct genome scanning and gene expression profiles

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Spatiotemporal control of cell signalling using a light-switchable protein interaction.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Defining network topologies that can achieve biochemical adaptation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Modeling a snap-action, variable-delay switch controlling extrinsic cell death

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Dynamic proteomics of individual cancer cells in response to a drug.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Dose-to-duration encoding and signaling beyond saturation in intracellular signaling networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Frequency-modulated nuclear localization bursts coordinate gene regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Encoding NF-kappaB temporal control in response to TNF: distinct roles for the negative regulators IkappaBalpha and A20.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Cell shape and negative links in regulatory motifs together control spatial information flow in signaling networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Induction and processing of complex DNA damage in human breast cancer cells MCF-7 and nonmalignant MCF-10A cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Spatial regulation of Fus3 MAP kinase activity through a reaction-diffusion mechanism in yeast pheromone signalling.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Kinetic insulation as an effective mechanism for achieving pathway specificity in intracellular signaling networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Network motifs: theory and experimental approaches

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Small-molecule MDM2 antagonists reveal aberrant p53 signaling in cancer: implications for therapy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

ATM- and cell cycle-dependent regulation of ATR in response to DNA double-strand breaks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Transient IkappaB kinase activity mediates temporal NF-kappaB dynamics in response to a wide range of tumor necrosis factor-alpha doses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Stimulus specificity of gene expression programs determined by temporal control of IKK activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Achieving stability of lipopolysaccharide-induced NF-kappaB activation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Calcium oscillations and mammalian egg activation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Comment on "Oscillations in NF-kappaB signaling control the dynamics of gene expression".

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Oscillations in NF-kappaB signaling control the dynamics of gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Dynamics of the p53-Mdm2 feedback loop in individual cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

A network of immediate early gene products propagates subtle differences in mitogen-activated protein kinase signal amplitude and duration.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Untangling the wires: a strategy to trace functional interactions in signaling and gene networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Molecular interpretation of ERK signal duration by immediate early gene products

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Ragged spiking of free calcium in ADP-stimulated human platelets: regulation of puff-like calcium signals in vitro and ex vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Rapid caspase-3 activation during apoptosis revealed using fluorescence-resonance energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Generation of oscillations by the p53-Mdm2 feedback loop: a theoretical and experimental study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Cell-permeant caged InsP3 ester shows that Ca2+ spike frequency can optimize gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Calcium oscillations increase the efficiency and specificity of gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Evidence for MEK-independent pathways regulating the prolonged activation of the ERK-MAP kinases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Differential activation of transcription factors induced by Ca2+ response amplitude and duration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

A new generation of Ca2+ indicators with greatly improved fluorescence properties

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Microtubule-associated-protein (MAP) kinase activated by nerve growth factor and epidermal growth factor in PC12 cells. Identity with the mitogen-activated MAP kinase of fibroblastic cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Sustained activation of the mitogen-activated protein (MAP) kinase cascade may be required for differentiation of PC12 cells. Comparison of the effects of nerve growth factor and epidermal growth factor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Chemotactic signals induce cell differentiation in Dictyostelium discoideum

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

A noisy paracrine signal determines the cellular NF-kappaB response to lipopolysaccharide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

A module of negative feedback regulators defines growth factor signaling

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3707615

Prediction and validation of the distinct dynamics of transient and sustained ERK activation

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23452846

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Co-regulation of the mitogen-activated protein kinase, extracellular signal-regulated kinase 1, and the 90-kDa ribosomal S6 kinase in PC12 cells. Distinct effects of the neurotrophic factor, nerve growth factor, and the mitogenic factor, epidermal g

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23452846

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Real-time evaluation of p53 oscillatory behavior in vivo using bioluminescent imaging

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23452846

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2013.02.005

1 reference

1 August 2017

1 reference

1 August 2017

1 reference