(Q34342682)

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Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms

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scholarly article

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Europe PubMed Central

PubMed publication ID

1 August 2017

Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms (English)

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Europe PubMed Central

PubMed publication ID

1 August 2017

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1 reference

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inferred from title

Berat Z Haznedaroglu

object named as

Berat Z Haznedaroglu

1

0 references

4

object named as

Jordan Peccia

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

author name string

Darryl Reeves

2

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Hamid Rismani-Yazdi

3

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Europe PubMed Central

PubMed publication ID

1 August 2017

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publication date

18 July 2012

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Europe PubMed Central

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1 August 2017

BMC Bioinformatics

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Europe PubMed Central

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1 August 2017

13

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

170

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Next-generation transcriptome assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Comparing de novo genome assembly: the long and short of it

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Evaluation of next-generation sequencing software in mapping and assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

De novo assembly and analysis of RNA-seq data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Optimization of de novo transcriptome assembly from next-generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

De novo assembly of human genomes with massively parallel short read sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Effects of nitrogen sources on cell growth and lipid accumulation of green alga Neochloris oleoabundans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

KAAS: an automatic genome annotation and pathway reconstruction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

6 July 2018

RNA-Seq unleashed.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3489510

27 October 2018

Investigation of biomass and lipids production with Neochloris oleoabundans in photobioreactor

1 reference

https://pubmed.ncbi.nlm.nih.gov/22808927

12 December 2020

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inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-13-170

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

DBLP publication ID

journals/bmcbi/HaznedarogluRRP12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

ResearchGate publication ID

0 references

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