(Q34352768)

1 August 2017

title

DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements (English)

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1 August 2017

8

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1 August 2017

12

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1 August 2017

13

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1 August 2017

Michael B Clark

3

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Kuljeet Sandhu

object named as

Kuljeet S Sandhu

10

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Guoliang Li

object named as

Guoliang Li

9

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John Stamatoyannopoulos

14

object named as

John A Stamatoyannopoulos

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1 August 2017

Tim R Mercer

1

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1 August 2017

Stacey L Edwards

2

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1 August 2017

Shane J Neph

4

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1 August 2017

Hao Wang

5

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1 August 2017

Andrew B Stergachis

6

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1 August 2017

Sam John

7

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1 August 2017

Yijun Ruan

11

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1 August 2017

language of work or name

English

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publication date

23 June 2013

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1 August 2017

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1 August 2017

volume

45

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1 August 2017

issue

8

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1 August 2017

page(s)

852-859

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https://scigraph.springernature.com/pub.10.1038/ng.2677

1 August 2017

exact match

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cites work

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing

6 July 2018

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6 July 2018

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6 July 2018

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Progressive polycomb assembly on H3K27me3 compartments generates polycomb bodies with developmentally regulated motion

6 July 2018

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Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization

6 July 2018

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

6 July 2018

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Targeted RNA sequencing reveals the deep complexity of the human transcriptome

6 July 2018

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ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

6 July 2018

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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

6 July 2018

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The proteomes of transcription factories containing RNA polymerases I, II or III.

6 July 2018

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Transcription factories in the context of the nuclear and genome organization

6 July 2018

1 reference

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Pre-mRNA splicing is a determinant of histone H3K36 methylation

6 July 2018

1 reference

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CTCF-mediated functional chromatin interactome in pluripotent cells

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Mapping and analysis of chromatin state dynamics in nine human cell types

6 July 2018

1 reference

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Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

FIMO: scanning for occurrences of a given motif

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Epigenetics in alternative pre-mRNA splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells

6 July 2018

1 reference

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Chromatin density and splicing destiny: on the cross-talk between chromatin structure and splicing

6 July 2018

1 reference

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The transcriptional interactome: gene expression in 3D.

6 July 2018

1 reference

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ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

6 July 2018

1 reference

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Regulation of alternative splicing by histone modifications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Does CTCF mediate between nuclear organization and gene expression?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Progression through the RNA polymerase II CTD cycle

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex

6 July 2018

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Nucleosomes are well positioned in exons and carry characteristic histone modifications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Differential chromatin marking of introns and expressed exons by H3K36me3.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Alternative isoform regulation in human tissue transcriptomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Dynamic interactions between the promoter and terminator regions of the mammalian BRCA1 gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Splicing, transcription, and chromatin: a ménage à trois

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

What is a gene, post-ENCODE? History and updated definition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Genome-wide transcription and the implications for genomic organization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

GENCODE: producing a reference annotation for ENCODE

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

The transcriptional landscape of the mammalian genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Understanding alternative splicing: towards a cellular code

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Promoter usage and alternative splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Discovery of functional noncoding elements by digital analysis of chromatin structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Open source clustering software

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Alternative pre-mRNA splicing and proteome expansion in metazoans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Functional association between promoter structure and transcript alternative splicing.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4405174

Intron size in mammals: complexity comes to terms with economy

6 July 2018

1 reference

Nucleosome positioning as a determinant of exon recognition

21 January 2018

1 reference

Nucleosomes are preferentially positioned at exons in somatic and sperm cells

21 January 2018

1 reference

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

21 January 2018

1 reference

Promoter-driven splicing regulation in fission yeast

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1038/NG.2677

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1 August 2017

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1 August 2017

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