(Q34364445)

1 August 2017

title

Efficient aminoacylation of the tRNA(Ala) acceptor stem: dependence on the 2:71 base pair (English)

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1 August 2017

4

Karin Musier-Forsyth

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Christopher Cramer

object named as

Christopher J Cramer

3

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author name string

Penny J Beuning

1

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1 August 2017

Maria C Nagan

2

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1 August 2017

Josep-Lluis Gelpí

5

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1 August 2017

Donald Bashford

6

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1 August 2017

language of work or name

English

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publication date

1 May 2002

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1 August 2017

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1 August 2017

volume

8

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1 August 2017

issue

5

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1 August 2017

page(s)

659-670

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1 August 2017

cites work

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6 July 2018

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Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelix(Ala) variants.

6 July 2018

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6 July 2018

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Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution

6 July 2018

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The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Specific atomic groups and RNA helix geometry in acceptor stem recognition by a tRNA synthetase

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Variant minihelix RNAs reveal sequence-specific recognition of the helical tRNA(Ser) acceptor stem by E.coli seryl-tRNA synthetase.

6 July 2018

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The crystal structure of the ternary complex of T.thermophilus seryl-tRNA synthetase with tRNA(Ser) and a seryl-adenylate analogue reveals a conformational switch in the active site

6 July 2018

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Proton NMR studies of manganese ion binding to tRNA-derived acceptor arm duplexes

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Evidence for interaction of an aminoacyl transfer RNA synthetase with a region important for the identity of its cognate transfer RNA.

6 July 2018

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6 July 2018

1 reference

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Defining the structure of irregular nucleic acids: conventions and principles

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

6 July 2018

RNA structure prediction

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Improved free-energy parameters for predictions of RNA duplex stability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Chemical synthesis of biologically active oligoribonucleotides using beta-cyanoethyl protected ribonucleoside phosphoramidites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Four sites in the acceptor helix and one site in the variable pocket of tRNA(Ala) determine the molecule's acceptor identity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Overlapping nucleotide determinants for specific aminoacylation of RNA microhelices.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Electrostatic calculations of the pKa values of ionizable groups in bacteriorhodopsin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Classical molecular interaction potentials: improved setup procedure in molecular dynamics simulations of proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Multiple structures for the 2-aminopurine-cytosine mispair

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370286

A simple structural feature is a major determinant of the identity of a transfer RNA

27 October 2018

1 reference

12 December 2020

Specificity for aminoacylation of an RNA helix: an unpaired, exocyclic amino group in the minor groove

1 reference

12 December 2020

Major groove accessibility of RNA

1 reference

12 December 2020

Identification of discriminator base atomic groups that modulate the alanine aminoacylation reaction

1 reference

12 December 2020

Structural alignment of ferredoxin and flavodoxin based on electrostatic potentials: implications for their interactions with photosystem I and ferredoxin-NADP reductase

1 reference

12 December 2020

Structural and dynamic helix geometry alterations induced by mismatch base pairs in double-helical RNA

1 reference

12 December 2020

10.1017/S1355838202020277

Identifiers

DOI

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1 August 2017

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1 August 2017

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