(Q34368766)

1 August 2017

title

Characterization of transposable elements in the ectomycorrhizal fungus Laccaria bicolor (English)

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1 August 2017

Laccaria bicolor

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2

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1 August 2017

Jessy Labbé

1

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Gerald A Tuskan

object named as

Gerald A Tuskan

series ordinal

4

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Francis Martin

series ordinal

6

object named as

Francis Martin

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1 August 2017

3

Emmanuelle Morin

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1 August 2017

François Le Tacon

5

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1 August 2017

language of work or name

English

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publication date

3 August 2012

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1 August 2017

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1 August 2017

volume

7

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1 August 2017

issue

8

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1 August 2017

page(s)

e40197

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Creative Commons Attribution 4.0 International

1 August 2017

copyright license

start time

3 August 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Asynchronous origins of ectomycorrhizal clades of Agaricales

6 July 2018

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Emerging knowledge from genome sequencing of crop species

6 July 2018

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Considering transposable element diversification in de novo annotation approaches

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Generation of microsatellite repeat families by RTE retrotransposons in lepidopteran genomes

6 July 2018

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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

6 July 2018

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Distribution, diversity, evolution, and survival of Helitrons in the maize genome

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Non-LTR retrotransposons in fungi

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

6 July 2018

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Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Transposable elements and the plant pan-genomes

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Plant genome organisation and diversity: the year of the junk!

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Combined evidence annotation of transposable elements in genome sequences

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

The genome sequence of the rice blast fungus Magnaporthe grisea

6 July 2018

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Rapid recent growth and divergence of rice nuclear genomes

6 July 2018

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Microsatellites: simple sequences with complex evolution

6 July 2018

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Tourist C transposable elements are closely associated with genes expressed in flowers of rice (Oryza sativa).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Transposable elements and the evolution of genome size in eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Repetitive DNA elements in fungi (Mycota): impact on genomic architecture and evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Plant transposable elements: where genetics meets genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Micron, a microsatellite-targeting transposable element in the rice genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Gene galaxies in the maize genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Initial sequencing and analysis of the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Transposable elements and host genome evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Selection against frameshift mutations limits microsatellite expansion in coding DNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Tandem repeats finder: a program to analyze DNA sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Targeting transposition: at home in the genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Alu repeats: a source for the genesis of primate microsatellites.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

The neighbor-joining method: a new method for reconstructing phylogenetic trees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole-genome sequence assemblies.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Gene organization of the mating type regions in the ectomycorrhizal fungus Laccaria bicolor reveals distinct evolution between the two mating type loci.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

A functional screen identifies lateral transfer of beta-glucuronidase (gus) from bacteria to fungi

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Identification of Ty1-copia retrotransposons in three ectomycorrhizal basidiomycetes: evolutionary relationships and use as molecular markers

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

LTR_STRUC: a novel search and identification program for LTR retrotransposons

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Molecular domestication--more than a sporadic episode in evolution.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411680

Distribution of the fungal transposon Restless: full-length and truncated copies in closely related strains

27 October 2018

1 reference

12 December 2020

Insertions, substitutions, and the origin of microsatellites

1 reference

12 December 2020

The rice R gene family: two distinct subfamilies containing several miniature inverted-repeat transposable elements

1 reference

12 December 2020

Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0040197

Identifiers

DOI

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1 August 2017

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1 August 2017

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