(Q34433014)

2 August 2017

Phylogenomic interrogation of arachnida reveals systemic conflicts in phylogenetic signal (English)

1 reference

2 August 2017

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1 reference

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1

Prashant P Sharma

1 reference

2 August 2017

7

Gonzalo Giribet

1 reference

2 August 2017

Alicia R Pérez-Porro

3

0 references

Gustavo Hormiga

series ordinal

5

object named as

Gustavo Hormiga

0 references

Ward C. Wheeler

series ordinal

6

object named as

Ward C Wheeler

1 reference

2 August 2017

Stefan T Kaluziak

2

1 reference

PubMed ID

25107551

2 August 2017

Vanessa L González

series ordinal

4

1 reference

2 August 2017

8 August 2014

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Molecular Biology and Evolution

2 August 2017

1 reference

2 August 2017

31

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2 August 2017

11

1 reference

2 August 2017

2963-2984

1 reference

Inferring hierarchical orthologous groups from orthologous gene pairs

2 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

OMA 2011: orthology inference among 1000 complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Nucleotide composition of CO1 sequences in Chelicerata (Arthropoda): detecting new mitogenomic rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The expression of limb gap genes in the mite Archegozetes longisetosus reveals differential patterning mechanisms in chelicerates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Conserved genes, sampling error, and phylogenomic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generation sequence analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Silurian horseshoe crab illuminates the evolution of arthropod limbs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Elongation factor-1α, a putative single-copy nuclear gene, has divergent sets of paralogs in an arachnid

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Geological history and phylogeny of Chelicerata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Reinterpreting the morphology of the Jurassic scorpion Liassoscorpionides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Broad phylogenomic sampling improves resolution of the animal tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Evaluating topological conflict in centipede phylogeny using transcriptomic data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

CD-HIT: accelerated for clustering the next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

First molecular evidence for the existence of a Tardigrada + Arthropoda clade

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Arthropod phylogeny based on eight molecular loci and morphology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The position of arthropods in the animal kingdom: a search for a reliable outgroup for internal arthropod phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A multilocus approach to harvestman (Arachnida: Opiliones) phylogeny with emphasis on biogeography and the systematics of Laniatores

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The genome of Tetranychus urticae reveals herbivorous pest adaptations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

SuperQ: computing supernetworks from quartets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The phylogenetic utility of the nuclear protein-coding gene EF-1α for resolving recent divergences in Opiliones, emphasizing intron evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Phylogenomic resolution of paleozoic divergences in harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Assessing the root of bilaterian animals with scalable phylogenomic methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Is the Felsenstein zone a fly trap?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Hox genes and the evolution of the arthropod body plan

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Microanatomy of Early Devonian book lungs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Gene silencing in the spider mite Tetranychus urticae: dsRNA and siRNA parental silencing of the Distal-less gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Arthropod phylogeny revisited, with a focus on crustacean relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Revised systematics of Palaeozoic ‘horseshoe crabs’ and the myth of monophyletic Xiphosura

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Modeling protein evolution with several amino acid replacement matrices depending on site rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Arthropod fossil data increase congruence of morphological and molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Rare genomic changes and mitochondrial sequences provide independent support for congruent relationships among the sea spiders (Arthropoda, Pycnogonida).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A phylogenomic approach to resolve the arthropod tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Deep metazoan phylogeny: when different genes tell different stories.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Molecular phylogeny of extant horseshoe crabs (Xiphosura, Limulidae) indicates Paleogene diversification of Asian species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Phylogenetic position of the acariform mites: sensitivity to homology assessment under total evidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Resolving difficult phylogenetic questions: why more sequences are not enough

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Phylogenomics revives traditional views on deep animal relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Heterotachy and long-branch attraction in phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Expression patterns of leg genes in the mouthparts of the spider Cupiennius salei (Chelicerata: Arachnida).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Phylogenetic position of Myriapoda revealed by 454 transcriptome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Bushes in the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Conflicting phylogenetic signals at the base of the metazoan tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Molecular timetrees reveal a Cambrian colonization of land and a new scenario for ecdysozoan evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Inferring ancient divergences requires genes with strong phylogenetic signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The book lungs of Scorpiones and Tetrapulmonata (Chelicerata, Arachnida): evidence for homology and a single terrestrialisation event of a common arachnid ancestor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Double-stranded RNA interference in the spider Cupiennius salei: the role of Distal-less is evolutionarily conserved in arthropod appendage formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Evolution of the chelicera: a dachshund domain is retained in the deutocerebral appendage of Opiliones (Arthropoda, Chelicerata).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Hox gene expression in the harvestman Phalangium opilio reveals divergent patterning of the chelicerate opisthosoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Hox gene duplications correlate with posterior heteronomy in scorpions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Distal-less and dachshund pattern both plesiomorphic and apomorphic structures in chelicerates: RNA interference in the harvestman Phalangium opilio (Opiliones).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

EVOLUTIONARY MORPHOLOGY AND PHYLOGENY OF ARAGHNIDA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A phylogenetic analysis of the arachnid orders based on morphological characters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Insect phylogenomics: exploring the source of incongruence using new transcriptomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

A rapid bootstrap algorithm for the RAxML Web servers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Untersuchungen zur Morphologie, Taxonomie und Phylogenie der Chelicerata1 I. Morphologische Untersuchungen

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Missing data and the design of phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

Convergence among cave catfishes: long-branch attraction and a Bayesian relative rates test.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

The evolutionary and biogeographic history of the armoured harvestmen - Laniatores phylogeny based on ten molecular markers, with the description of two new families of Opiliones (Arachnida)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU235

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSU235

1 reference

2 August 2017

1 reference

PubMed ID

25107551