(Q28710072)

English

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

scientific article (publication date: 29 November 2012)

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scholarly article

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Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa (English)

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4

object named as

Marta Novo

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object named as

Varpu Vahtera

6

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Alicia R Pérez-Porro

object named as

Alicia R Pérez-Porro

5

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Sónia C S Andrade

object named as

Sónia C S Andrade

2

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object named as

Ana Riesgo

1

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Gonzalo Giribet

object named as

Gonzalo Giribet

9

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Prashant P. Sharma

3

object named as

Prashant P Sharma

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Gisele Y Kawauchi

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object named as

Gisele Y Kawauchi

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author name string

Vanessa L González

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language of work or name

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publication date

29 November 2012

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Frontiers in Zoology

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9

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1

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33

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https://scigraph.springernature.com/pub.10.1186/1742-9994-9-33

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Phylogenomic resolution of paleozoic divergences in harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data

1 reference

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1 reference

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A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni

1 reference

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17 March 2017

Phylogenomics reveals deep molluscan relationships

1 reference

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17 March 2017

Differential gene expression in the siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next-generation sequencing workflows

1 reference

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17 March 2017

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

1 reference

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

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Phylogenomic analyses unravel annelid evolution

1 reference

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De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

1 reference

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1 reference

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17 March 2017

Comparing de novo assemblers for 454 transcriptome data

1 reference

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17 March 2017

Optimization of de novo transcriptome assembly from next-generation sequencing data

1 reference

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1 reference

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1 reference

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BLAST+: architecture and applications

1 reference

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17 March 2017

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1 reference

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1 reference

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17 March 2017

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

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17 March 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

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17 March 2017

Broad phylogenomic sampling improves resolution of the animal tree of life

1 reference

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17 March 2017

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

17 March 2017

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

17 March 2017

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1 reference

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17 March 2017

Synergy between sequence and size in Large-scale genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

17 March 2017

The MAM (meprin/A5-protein/PTPmu) domain is a homophilic binding site promoting the lateral dimerization of receptor-like protein-tyrosine phosphatase mu

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

17 March 2017

The protein kinase complement of the human genome

1 reference

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17 March 2017

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

17 March 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

17 March 2017

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

7 April 2017

ABySS: a parallel assembler for short read sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

7 April 2017

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

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7 April 2017

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1 reference

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7 April 2017

A unified classification system for eukaryotic transposable elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

7 April 2017

Elongation factor-1α, a putative single-copy nuclear gene, has divergent sets of paralogs in an arachnid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

20 June 2018

Evolution of the chelicera: a dachshund domain is retained in the deutocerebral appendage of Opiliones (Arthropoda, Chelicerata).

1 reference

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20 June 2018

Hox gene expression in the harvestman Phalangium opilio reveals divergent patterning of the chelicerate opisthosoma

1 reference

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20 June 2018

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

1 reference

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20 June 2018

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1 reference

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RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug.

1 reference

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1 reference

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20 June 2018

Optimization of preservation and storage time of sponge tissues to obtain quality mRNA for next-generation sequencing.

1 reference

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20 June 2018

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1 reference

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20 June 2018

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1 reference

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20 June 2018

Next-generation transcriptome assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

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RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis

1 reference

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1 reference

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The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus.

1 reference

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20 June 2018

De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traits

1 reference

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De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology

1 reference

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1 reference

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De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq.

1 reference

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Transcriptional activity of transposable elements in maize

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1 reference

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1 reference

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1 reference

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20 June 2018

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1 reference

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1 reference

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1 reference

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Chimeric transcript discovery by paired-end transcriptome sequencing

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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20 June 2018

Notch signaling during larval and juvenile development in the polychaete annelid Capitella sp. I.

1 reference

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20 June 2018

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

20 June 2018

Evolutionary biology of centipedes (Myriapoda: Chilopoda).

1 reference

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20 June 2018

Phylogenetic analysis of Myriapoda using three nuclear protein-coding genes

1 reference

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20 June 2018

Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

20 June 2018

The evolution of signalling pathways in animal development

1 reference

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20 June 2018

Divergence pattern of animal gene families and relationship with the Cambrian explosion

1 reference

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20 June 2018

Orthologs, paralogs and genome comparisons

1 reference

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20 June 2018

Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes.

1 reference

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20 June 2018

A mitochondrial elongation factor-like protein is over-expressed in tumours and differentially expressed in normal tissues

1 reference

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20 June 2018

Epithelia, an evolutionary novelty of metazoans

1 reference

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27 November 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

27 November 2018

Wasp gene expression supports an evolutionary link between maternal behavior and eusociality.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538665

27 November 2018

Identifiers

10.1186/1742-9994-9-33

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Consolidated OpenCitations Corpus – April 2017

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OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

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