(Q34435154)

2 August 2017

title

Evolution of transcriptional regulation in closely related bacteria (English)

1 reference

2 August 2017

1 reference

Mikhail A Pyatnitskiy

series ordinal

2

0 references

Marat D. Kazanov

object named as

Marat D Kazanov

series ordinal

3

0 references

Mikhail Gelfand

series ordinal

4

object named as

Mikhail S Gelfand

1 reference

2 August 2017

Olga V Tsoy

1

1 reference

2 August 2017

publication date

6 October 2012

1 reference

2 August 2017

published in

BMC Evolutionary Biology

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2 August 2017

volume

12

1 reference

2 August 2017

page(s)

200

1 reference

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

2 August 2017

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6 July 2018

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6 July 2018

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6 July 2018

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Universal patterns of purifying selection at noncoding positions in bacteria

6 July 2018

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6 July 2018

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Orthologous transcription factors in bacteria have different functions and regulate different genes

6 July 2018

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Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

6 July 2018

1 reference

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Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae).

6 July 2018

1 reference

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Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria

6 July 2018

1 reference

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Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle

6 July 2018

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6 July 2018

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Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

6 July 2018

1 reference

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Evolution of transcriptional regulatory networks in microbial genomes

6 July 2018

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The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator

6 July 2018

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6 July 2018

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Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli

6 July 2018

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Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach

6 July 2018

1 reference

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Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria

6 July 2018

1 reference

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Adaptive evolution of transcription factor binding sites

6 July 2018

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6 July 2018

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Dissecting the transcription networks of a cell using computational genomics

6 July 2018

1 reference

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Identifying global regulators in transcriptional regulatory networks in bacteria

6 July 2018

1 reference

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Structure and function of the feed-forward loop network motif

6 July 2018

1 reference

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6 July 2018

1 reference

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Evolution of transcription factors and the gene regulatory network in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735044

Regulation of yodA encoding a novel cadmium-induced protein in Escherichia coli.

6 July 2018

1 reference

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Network motifs: simple building blocks of complex networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735044

Congruent evolution of different classes of non-coding DNA in prokaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735044

Network motifs in the transcriptional regulation network of Escherichia coli

6 July 2018

1 reference

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Dual repression by Fe(2+)-Fur and Mn(2+)-MntR of the mntH gene, encoding an NRAMP-like Mn(2+) transporter in Escherichia coli

6 July 2018

1 reference

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Identification of additional genes belonging to the LexA regulon in Escherichia coli

6 July 2018

1 reference

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Recognition of regulatory sites by genomic comparison.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3735044

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

6 July 2018

1 reference

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Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors

6 July 2018

1 reference

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Searching for regulatory elements in human noncoding sequences.

6 July 2018

1 reference

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6 July 2018

1 reference

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Iron and oxygen regulation of Escherichia coli MnSOD expression: competition between the global regulators Fur and ArcA for binding to DNA.

6 July 2018

1 reference

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Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay.

6 July 2018

1 reference

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6 July 2018

1 reference

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Bacterial regulation: global regulatory networks

6 July 2018

1 reference

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Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli

6 July 2018

1 reference

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Regulation of divergent transcription from the iron-responsive fepB-entC promoter-operator regions in Escherichia coli

6 July 2018

1 reference

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6 July 2018

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27 October 2018

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Activation of the Cpx regulon destabilizes the F plasmid transfer activator, TraJ, via the HslVU protease in Escherichia coli.

27 October 2018

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Biological network comparison using graphlet degree distribution

27 October 2018

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A crossover from metal to plasma in dense fluid hydrogen.

27 October 2018

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The RcnRA (YohLM) system of Escherichia coli: a connection between nickel, cobalt and iron homeostasis.

27 October 2018

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Co-evolution of transcription factors and their targets depends on mode of regulation

27 October 2018

1 reference

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Evolutionary dynamics of prokaryotic transcriptional regulatory networks

27 October 2018

1 reference

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Adaptive evolution of non-coding DNA in Drosophila

27 October 2018

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Identification of functional transcription factor binding sites using closely related Saccharomyces species

27 October 2018

1 reference

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A method for direct cloning of fur-regulated genes: identification of seven new fur-regulated loci in Escherichia coli.

27 October 2018

1 reference

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Regulation of fumarase (fumB) gene expression in Escherichia coli in response to oxygen, iron and heme availability: role of the arcA, fur, and hemA gene products

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23039862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[Software for analyzing bacterial genomes]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23039862

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2148-12-200

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference