(Q34444766)

2 August 2017

title

Computational tools for viral metagenomics and their application in clinical research (English)

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2 August 2017

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computational research

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2

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2 August 2017

C Desnues

3

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author name string

L Fancello

series ordinal

1

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2 August 2017

language of work or name

English

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publication date

11 October 2012

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2 August 2017

number of pages

13

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based on heuristic

inferred from page(s)

published in

Virology

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2 August 2017

volume

434

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2 August 2017

issue

2

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2 August 2017

page(s)

162-174

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Cloning of a human parvovirus by molecular screening of respiratory tract samples

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7 January 2021

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Real-time DNA sequencing from single polymerase molecules

7 January 2021

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Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota

7 January 2021

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7 January 2021

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Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

7 January 2021

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Prevalence of lysogeny among soil bacteria and presence of 16S rRNA and trzN genes in viral-community DNA.

7 January 2021

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7 January 2021

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7 January 2021

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A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America

7 January 2021

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The TIGRFAMs database of protein families

7 January 2021

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Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

7 January 2021

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PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences

7 January 2021

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Identification of a novel picornavirus related to cosaviruses in a child with acute diarrhea

7 January 2021

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CAP3: A DNA sequence assembly program

7 January 2021

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Microbiology: metagenomics

7 January 2021

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MEGAN analysis of metagenomic data

7 January 2021

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Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses

7 January 2021

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Dinucleotide relative abundance extremes: a genomic signature

7 January 2021

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Heterogeneity of genomes: measures and values

7 January 2021

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Compositional biases of bacterial genomes and evolutionary implications

7 January 2021

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Hidden Markov models for detecting remote protein homologies

7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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A de novo metagenomic assembly program for shotgun DNA reads.

7 January 2021

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Gene transfer agents: phage-like elements of genetic exchange

7 January 2021

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Genovo: de novo assembly for metagenomes

7 January 2021

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Mechanism of chimera formation during the Multiple Displacement Amplification reaction

7 January 2021

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TagDust--a program to eliminate artifacts from next generation sequencing data

7 January 2021

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The bacteriophages in human- and animal body-associated microbial communities.

7 January 2021

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7 January 2021

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A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio

7 January 2021

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7 January 2021

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7 January 2021

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High diversity of the viral community from an Antarctic lake

7 January 2021

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Metagenomics and industrial applications

7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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Genome sequencing in microfabricated high-density picolitre reactors

7 January 2021

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Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls

7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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A molecular view of microbial diversity and the biosphere

7 January 2021

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A new arenavirus in a cluster of fatal transplant-associated diseases

7 January 2021

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Identifying biologically relevant differences between metagenomic communities

7 January 2021

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Meta-IDBA: a de Novo assembler for metagenomic data

7 January 2021

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Distinguishing microbial genome fragments based on their composition: evolutionary and comparative genomic perspectives

7 January 2021

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An Eulerian path approach to DNA fragment assembly

7 January 2021

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Evaluating the fidelity of de novo short read metagenomic assembly using simulated data

7 January 2021

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Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome

7 January 2021

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The Pfam protein families database

7 January 2021

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Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray

7 January 2021

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Astrovirus encephalitis in boy with X-linked agammaglobulinemia

7 January 2021

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Get the most out of your metagenome: computational analysis of environmental sequence data

7 January 2021

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The Uncultured Microbial Majority

7 January 2021

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Vaginal microbiome of reproductive-age women

7 January 2021

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Viruses in the faecal microbiota of monozygotic twins and their mothers

7 January 2021

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Viruses from extreme thermal environments

7 January 2021

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An application of statistics to comparative metagenomics

7 January 2021

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Exploring the viral world through metagenomics

7 January 2021

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Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences

7 January 2021

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Metavir: a web server dedicated to virome analysis

7 January 2021

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

7 January 2021

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TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

7 January 2021

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Fast identification and removal of sequence contamination from genomic and metagenomic datasets

7 January 2021

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ABySS: a parallel assembler for short read sequence data

7 January 2021

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Functional characterization of the antibiotic resistance reservoir in the human microflora

7 January 2021

1 reference

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CODEHOP PCR and CODEHOP PCR primer design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue

7 January 2021

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7 January 2021

1 reference

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Conserved clusters of functionally related genes in two bacterial genomes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Evolution of gene order conservation in prokaryotes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Application of tetranucleotide frequencies for the assignment of genomic fragments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Metagenomics - a guide from sampling to data analysis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Laboratory procedures to generate viral metagenomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Frequency analysis techniques for identification of viral genetic data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

The human microbiome project

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Discovering novel zoonotic viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

MetaCluster 4.0: a novel binning algorithm for NGS reads and huge number of species.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Ecology of prokaryotic viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

7 January 2021

A primer on metagenomics

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Metagenomics: Facts and Artifacts, and Computational Challenges*

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

VIROME: a standard operating procedure for analysis of viral metagenome sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Viral infection in acute exacerbation of idiopathic pulmonary fibrosis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Symbiosis insights through metagenomic analysis of a microbial consortium

7 January 2021

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Accurate genome relative abundance estimation based on shotgun metagenomic reads

7 January 2021

1 reference

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Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach

7 January 2021

1 reference

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An ORFome assembly approach to metagenomics sequences analysis

7 January 2021

1 reference

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Multiple displacement amplification compromises quantitative analysis of metagenomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Virus identification in unknown tropical febrile illness cases using deep sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIROL.2012.09.025

RNA viral community in human feces: prevalence of plant pathogenic viruses

7 January 2021

1 reference

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HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors

7 January 2021

1 reference

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ARACHNE: a whole-genome shotgun assembler

7 January 2021

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PubMed

https://pubmed.ncbi.nlm.nih.gov/23062738

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

BLAT—The BLAST-Like Alignment Tool

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23062738

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.VIROL.2012.09.025

1 reference

2 August 2017

0 references

1 reference