(Q34489265)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

author name string

Jason S Cumbie

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Maria G Ivanchenko

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

language of work or name

English

0 references

publication date

13 August 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

page(s)

597

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

22 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Base preferences in non-templated nucleotide incorporation by MMLV-derived reverse transcriptases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

A paired-end sequencing strategy to map the complex landscape of transcription initiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

TopHat: discovering splice junctions with RNA-Seq

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

A transcription factor affinity-based code for mammalian transcription initiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Identification of plant promoter constituents by analysis of local distribution of short sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Genome-wide analysis of mammalian promoter architecture and evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

WebLogo: A Sequence Logo Generator

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

The generic genome browser: a building block for a model organism system database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

CapSelect: a highly sensitive method for 5' CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4534009

Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-1670-6

Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-1670-6

A high-resolution root spatiotemporal map reveals dominant expression patterns.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-1670-6

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26268438

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-015-1670-6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

26268438

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26268438%20AND%20SRC:MED&resulttype=core&format=json