(Q34502174)

2 August 2017

title

Transcriptional Enhancers: Bridging the Genome and Phenome (English)

1 reference

2 August 2017

Bing Ren

1

1 reference

2 August 2017

Feng Yue

series ordinal

2

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2 August 2017

publication date

18 November 2015

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Cold Spring Harbor Symposia on Quantitative Biology

2 August 2017

published in

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2 August 2017

volume

80

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2 August 2017

page(s)

17-26

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The role of regulatory variation in complex traits and disease

2 August 2017

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Chromatin architecture reorganization during stem cell differentiation.

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Mapping and analysis of chromatin state dynamics in nine human cell types

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Human genetic variation and its contribution to complex traits

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An oestrogen-receptor-α-bound human chromatin interactome

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The 3D genome in transcriptional regulation and pluripotency

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Regulation of human globin gene switching.

21 January 2018

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Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

21 January 2018

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Mapping cis- and trans-regulatory effects across multiple tissues in twins

21 January 2018

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Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

21 January 2018

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Importance of globin gene order for correct developmental expression.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Fine structure of the origin-proximal DNAase I-hypersensitive region in wild-type and EC mutant polyoma

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Super-enhancers in the control of cell identity and disease

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues

21 January 2018

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5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation

21 January 2018

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Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

21 January 2018

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Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment.

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

21 January 2018

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Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Regulation of beta-globin gene expression: straightening out the locus.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Systematic localization of common disease-associated variation in regulatory DNA

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

The SV40 72 base repair repeat has a striking effect on gene expression both in SV40 and other chimeric recombinants

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Organization of the mitotic chromosome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Circuitry and dynamics of human transcription factor regulatory networks

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Spatial partitioning of the regulatory landscape of the X-inactivation centre

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Rapid and pervasive changes in genome-wide enhancer usage during mammalian development

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

The genetic and mechanistic basis for variation in gene regulation

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Massively parallel functional dissection of mammalian enhancers in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

In vivo enhancer analysis of human conserved non-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Single-tissue and cross-tissue heritability of gene expression via identity-by-descent in related or unrelated individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

A unique chromatin signature uncovers early developmental enhancers in humans

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

RFECS: a random-forest based algorithm for enhancer identification from chromatin state

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Integrative analysis of 111 reference human epigenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Human body epigenome maps reveal noncanonical DNA methylation variation

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Three-dimensional folding and functional organization principles of the Drosophila genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

High-throughput functional genomics using CRISPR-Cas9.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

A map of the cis-regulatory sequences in the mouse genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Enhancer biology and enhanceropathies

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

DNA-binding factors shape the mouse methylome at distal regulatory regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

The accessible chromatin landscape of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Mapping of DNase I-hypersensitive sites in the upstream DNA of human embryonic epsilon-globin gene in K562 leukemia cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

VISTA Enhancer Browser--a database of tissue-specific human enhancers

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

ChIP-seq accurately predicts tissue-specific activity of enhancers

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Chromosomal subunits in active genes have an altered conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Master transcription factors and mediator establish super-enhancers at key cell identity genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

A comparative encyclopedia of DNA elements in the mouse genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Charting a dynamic DNA methylation landscape of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

β-Globin gene inactivation by DNA translocation in γβ-thalassaemi

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2015.80.027219

10.1101/SQB.2015.80.027219

21 January 2018

Identifiers

DOI

1 reference

2 August 2017

1 reference