(Q34515019)

25373614

2 August 2017

title

Genome-wide analysis in Plasmodium falciparum reveals early and late phases of RNA polymerase II occupancy during the infectious cycle (English)

1 reference

25373614

DNA-directed RNA polymerase II subunit RPB2, putative

2 August 2017

main subject

Plasmodium falciparum

0 references

1 reference

GeneDB

DNA-directed RNA polymerase II subunit RPB1

10 September 2018

1 reference

GeneDB

DNA-directed RNA polymerase II subunit RPB3, putative

10 September 2018

1 reference

GeneDB

DNA-directed RNA polymerase II subunit RPB1, putative

11 September 2018

0 references

DNA-directed RNA polymerase II subunit RPB1, putative

0 references

DNA-directed RNA polymerase II subunit RPB1, putative

0 references

DNA-directed RNA polymerase II subunit RPB1, putative

0 references

DNA-directed RNA polymerase II subunit RPB1, putative

0 references

DNA-directed RNA polymerase II subunit RPB1, putative

0 references

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Zbynek Bozdech

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Mark Featherstone

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Ragini Rai

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Lei Zhu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Haifen Chen

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Archana Patkar Gupta

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Jie Zheng

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Christiane Ruedl

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

0 references

publication date

6 November 2014

1 reference

2 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

959

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

8 June 2020

limma

object named as

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4232647

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Identification of a novel and unique transcription factor in the intraerythrocytic stage of Plasmodium falciparum

7 July 2018

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7 July 2018

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Dynamic epigenetic regulation of gene expression during the life cycle of malaria parasite Plasmodium falciparum

7 July 2018

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H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome

7 July 2018

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7 July 2018

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7 July 2018

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Gene-specific requirement of RNA polymerase II CTD phosphorylation

7 July 2018

1 reference

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Chromatin modifications, epigenetics, and how protozoan parasites regulate their lives.

7 July 2018

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The role of chromatin in Plasmodium gene expression

7 July 2018

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Genomics and integrated systems biology in Plasmodium falciparum: a path to malaria control and eradication

7 July 2018

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Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation

7 July 2018

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Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes

7 July 2018

1 reference

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CCR4-associated factor 1 coordinates the expression of Plasmodium falciparum egress and invasion proteins

7 July 2018

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H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3

7 July 2018

1 reference

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Characterization of antibody-mediated neutralization directed against the hypervariable region 1 of hepatitis C virus E2 glycoprotein

7 July 2018

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Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression

7 July 2018

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Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum

7 July 2018

1 reference

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Histone deacetylases play a major role in the transcriptional regulation of the Plasmodium falciparum life cycle

7 July 2018

1 reference

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Nucleosome landscape and control of transcription in the human malaria parasite

7 July 2018

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An unusual recent expansion of the C-terminal domain of RNA polymerase II in primate malaria parasites features a motif otherwise found only in mammalian polymerases.

7 July 2018

1 reference

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Patterns of gene-specific and total transcriptional activity during the Plasmodium falciparum intraerythrocytic developmental cycle

7 July 2018

1 reference

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7 July 2018

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Inferring causal relationships among different histone modifications and gene expression

7 July 2018

1 reference

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Poised RNA polymerase II gives pause for thought

7 July 2018

1 reference

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Molecular evolution of the RNA polymerase II CTD.

7 July 2018

1 reference

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Cracking the RNA polymerase II CTD code

7 July 2018

1 reference

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Transcribing RNA polymerase II is phosphorylated at CTD residue serine-7.

7 July 2018

1 reference

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Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy

7 July 2018

1 reference

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Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle

7 July 2018

1 reference

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The general transcription machinery and general cofactors

7 July 2018

1 reference

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Acetylation of yeast histone H4 lysine 16: a switch for protein interactions in heterochromatin and euchromatin

7 July 2018

1 reference

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Evidence that phosphorylation of the RNA polymerase II carboxyl-terminal repeats is similar in yeast and humans.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

Comparative genomics of cyclin-dependent kinases suggest co-evolution of the RNAP II C-terminal domain and CTD-directed CDKs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

Human housekeeping genes are compact

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

Life without transcriptional control? From fly to man and back again

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

Introns increase transcriptional efficiency in transgenic mice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

Inhibition of in vivo and in vitro transcription by monoclonal antibodies prepared against wheat germ RNA polymerase II that react with the heptapeptide repeat of eukaryotic RNA polymerase II.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

A method for the rapid sequence-independent amplification of microdissected chromosomal material

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

Cultivation of malarial parasites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

Plasmodium falciparum: Preinitiation complex occupancy of active and inactive promoters during erythrocytic stage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

First exon length controls active chromatin signatures and transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

Comparative genomics and evolution of proteins associated with RNA polymerase II C-terminal domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

A gene-specific requirement of RNA polymerase II CTD phosphorylation for sexual differentiation in S. pombe

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

Elucidating the temporal dynamics of chromatin-associated protein release upon DNA digestion by quantitative proteomic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

Non-linear normalization and background correction in one-channel cDNA microarray studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

DNA microarray-based genome-wide analyses of Plasmodium parasites

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4232647

A transcription reinitiation intermediate that is stabilized by activator

27 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-959

A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25373614

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-15-959

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

8 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

25373614

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25373614%20AND%20SRC:MED&resulttype=core&format=json