(Q34531280)

2 August 2017

DNA Topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae (English)

1 reference

2 August 2017

Saccharomyces cerevisiae

1 reference

inferred from title

author

Mikkel Heide Schierup

8

1 reference

2 August 2017

Jakob Madsen Pedersen

1

1 reference

2 August 2017

Jacob Fredsoe

2

1 reference

2 August 2017

Morten Roedgaard

3

1 reference

2 August 2017

Lotte Andreasen

4

1 reference

2 August 2017

Kamilla Mundbjerg

5

1 reference

2 August 2017

Mogens Kruhøffer

6

1 reference

2 August 2017

Marie Brinch

7

1 reference

2 August 2017

Lotte Bjergbaek

9

1 reference

2 August 2017

Anni Hangaard Andersen

10

1 reference

2 August 2017

20 December 2012

1 reference

2 August 2017

1 reference

2 August 2017

8

1 reference

2 August 2017

12

1 reference

2 August 2017

e1003128

1 reference

Creative Commons Attribution 4.0 International

2 August 2017

start time

20 December 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast.

7 July 2018

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Topoisomerase I regulates open chromatin and controls gene expression in vivo

7 July 2018

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Nucleosomal context of binding sites influences transcription factor binding affinity and gene regulation

7 July 2018

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Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes

7 July 2018

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The logic of chromatin architecture and remodelling at promoters

7 July 2018

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Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome

7 July 2018

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Two strategies for gene regulation by promoter nucleosomes

7 July 2018

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Epigenetic regulation and the variability of gene expression

7 July 2018

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A high-resolution atlas of nucleosome occupancy in yeast

7 July 2018

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Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation

7 July 2018

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Non-random clustering of stress-related genes during evolution of the S. cerevisiae genome

7 July 2018

1 reference

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A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription.

7 July 2018

1 reference

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Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA.

7 July 2018

1 reference

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Structural plasticity of single chromatin fibers revealed by torsional manipulation

7 July 2018

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A high-resolution map of transcription in the yeast genome

7 July 2018

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An intracellular phosphate buffer filters transient fluctuations in extracellular phosphate levels

7 July 2018

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A systematic high-throughput screen of a yeast deletion collection for mutants defective in PHO5 regulation

7 July 2018

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Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter

7 July 2018

1 reference

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Global position and recruitment of HATs and HDACs in the yeast genome.

7 July 2018

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The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

7 July 2018

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Global nucleosome occupancy in yeast

7 July 2018

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Polyphosphate Loss Promotes SNF/SWI- and Gcn5-Dependent Mitotic Induction of PHO5

7 July 2018

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Global and specific transcriptional repression by the histone H3 amino terminus in yeast

7 July 2018

1 reference

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FunSpec: a web-based cluster interpreter for yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

The genomics of yeast responses to environmental stress and starvation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Cellular roles of dna topoisomerases: a molecular perspective

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Precision and functional specificity in mRNA decay

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Transcriptional consequences of topoisomerase inhibition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Genomic expression programs in the response of yeast cells to environmental changes

7 July 2018

1 reference

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Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

7 July 2018

1 reference

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Dissecting the regulatory circuitry of a eukaryotic genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Topoisomerase function during replication-independent chromatin assembly in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

DNA topology and a minimal set of basal factors for transcription by RNA polymerase II

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

DNA topoisomerase I controls the kinetics of promoter activation and DNA topology in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

DNA topoisomerase I is involved in both repression and activation of transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

The DNA binding, cleavage, and religation reactions of eukaryotic topoisomerases I and II.

7 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

7 July 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Depletion of histone H4 and nucleosomes activates the PHO5 gene in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Assembly of spaced chromatin involvement of ATP and DNA topoisomerase activity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Supercoiling of the DNA template during transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Formation of nucleosomes on positively supercoiled DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

Positive supercoiling of DNA greatly diminishes mRNA synthesis in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3527272

The functional response of upstream DNA to dynamic supercoiling in vivo

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Local domains of supercoiling activate a eukaryotic promoter in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Global transcription regulation by DNA topoisomerase I in exponentially growing Saccharomyces cerevisiae cells: activation of telomere-proximal genes by TOP1 deletion

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Identification and distinct regulation of yeast TATA box-containing genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Nucleosome transactions on the promoters of the yeast GAL and PHO genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

A Flp-nick system to study repair of a single protein-bound nick in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Exploring functional relationships between components of the gene expression machinery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003128

Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23284296

12 December 2020

inferred from PubMed ID database lookup

Redundancy of chromatin remodeling pathways for the induction of the yeast PHO5 promoter in vivo

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23284296

12 December 2020

inferred from PubMed ID database lookup

SWI/SNF chromatin remodeling requires changes in DNA topology

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23284296

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003128

1 reference

2 August 2017

1 reference

2 August 2017

1 reference