(Q34551249)

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Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin.

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22 February 2020

Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin (English)

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22 February 2020

Streptomyces pratensis

object named as

Streptomyces pratensis

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Daniel H. Buckley

2

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22 February 2020

author name string

James R Doroghazi

1

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22 February 2020

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15 November 2014

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22 February 2020

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22 February 2020

15

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Europe PubMed Central

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22 February 2020

970

1 reference

Europe PubMed Central

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22 February 2020

A roadmap for natural product discovery based on large-scale genomics and metabolomics

1 reference

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7 July 2018

Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora

1 reference

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7 July 2018

Identification and characterization of the carbapenem MM 4550 and its gene cluster in Streptomyces argenteolus ATCC 11009.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Domain enhanced lookup time accelerated BLAST.

1 reference

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7 July 2018

Taxonomic evaluation of the Streptomyces hygroscopicus clade using multilocus sequence analysis and DNA-DNA hybridization, validating the MLSA scheme for systematics of the whole genus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

A model for the effect of homologous recombination on microbial diversification

1 reference

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The Salmonella enterica pan-genome

1 reference

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7 July 2018

Interplay of recombination and selection in the genomes of Chlamydia trachomatis

1 reference

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7 July 2018

CDD: a Conserved Domain Database for the functional annotation of proteins

1 reference

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7 July 2018

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

1 reference

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7 July 2018

Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

1 reference

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7 July 2018

Comparative genomic characterization of Actinobacillus pleuropneumoniae

1 reference

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7 July 2018

Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept

1 reference

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7 July 2018

Comparison of 61 sequenced Escherichia coli genomes

1 reference

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7 July 2018

Multilocus sequence analysis of Streptomyces griseus isolates delineating intraspecific diversity in terms of both taxonomy and biosynthetic potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

FastTree 2--approximately maximum-likelihood trees for large alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

ETE: a python Environment for Tree Exploration

1 reference

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7 July 2018

Proposal to reclassify the Streptomyces albidoflavus clade on the basis of multilocus sequence analysis and DNA-DNA hybridization, and taxonomic elucidation of Streptomyces griseus subsp. solvifaciens.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Clustal W and Clustal X version 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Antibiotics as signalling molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Recombination and the nature of bacterial speciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Critical residues and novel effects of overexpression of the Streptomyces coelicolor developmental protein BldB: evidence for a critical interacting partner

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Soil to genomics: the Streptomyces chromosome

1 reference

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7 July 2018

Bioactive microbial metabolites

1 reference

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7 July 2018

Bioconductor: open software development for computational biology and bioinformatics

1 reference

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7 July 2018

Mauve: multiple alignment of conserved genomic sequence with rearrangements

1 reference

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7 July 2018

Biosynthetic origin of the rare nitroaryl moiety of the polyketide antibiotic aureothin: involvement of an unprecedented N-oxygenase

1 reference

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7 July 2018

Selective isolation of aerobic Actinomycetes

1 reference

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7 July 2018

Observations on the chromatinic bodies of Streptomyces coelicolor

1 reference

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7 July 2018

Essential role of DivIVA in polar growth and morphogenesis in Streptomyces coelicolor A3(2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

The Biosynthetic Gene Cluster for the β-Lactam Carbapenem Thienamycin in Streptomyces cattleya

1 reference

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7 July 2018

Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Structural and genetic analysis of the BldB protein of Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Free recombination within Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

The bldB gene encodes a small protein required for morphogenesis, antibiotic production, and catabolite control in Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4239341

7 July 2018

Assembly of the cell division protein FtsZ into ladder-like structures in the aerial hyphae of Streptomyces coelicolor.

1 reference

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7 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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7 July 2018

A plasmid of Streptomyces coelicolor carrying a chromosomal locus and its inter-specific transfer.

1 reference

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7 July 2018

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7 July 2018

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7 July 2018

Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species.

1 reference

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21 January 2018

Widespread homologous recombination within and between Streptomyces species

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21 January 2018

The chromosomal DNA of Streptomyces lividans 66 is linear.

1 reference

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21 January 2018

Genome plasticity in Streptomyces: identification of 1 Mb TIRs in the S. coelicolor A3(2) chromosome.

1 reference

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21 January 2018

Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area

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21 January 2018

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

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27 October 2018

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12 December 2020

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Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

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12 December 2020

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1 reference

https://pubmed.ncbi.nlm.nih.gov/25399205

12 December 2020

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Cellulase complex of a mesophilic Streptomyces strain

1 reference

https://pubmed.ncbi.nlm.nih.gov/25399205

12 December 2020

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Artificial circularization of the chromosome with concomitant deletion of its terminal inverted repeats enhances genetic instability and genome rearrangement in Streptomyces lividans

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Instability of artificially circularized chromosomes of Streptomyces lividans

1 reference

https://pubmed.ncbi.nlm.nih.gov/25399205

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-15-970

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399205%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399205%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25399205%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

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