(Q34569594)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

title

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Jean Yang

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author name string

Michael Buckley

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

David Ming Lin

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

language of work or name

English

0 references

publication date

21 January 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

volume

14 Suppl 1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

page(s)

S9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

23 February 2020

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Using control genes to correct for unwanted variation in microarray data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Mouse genomic variation and its effect on phenotypes and gene regulation

7 July 2018

1 reference

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Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

7 July 2018

1 reference

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Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43.

7 July 2018

1 reference

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From RNA-seq reads to differential expression results

7 July 2018

1 reference

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NCBI GEO: archive for functional genomics data sets--10 years on

7 July 2018

1 reference

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Differential expression analysis for sequence count data

7 July 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

1 reference

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The Generalization of `Student's' Problem when Several Different Population Variances are Involved

7 July 2018

1 reference

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

RNA-Seq: a revolutionary tool for transcriptomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

affy--analysis of Affymetrix GeneChip data at the probe level

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Statistical tests for differential expression in cDNA microarray experiments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

The logic of chromatin architecture and remodelling at promoters

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

GABP transcription factor is required for development of chronic myelogenous leukemia via its control of PRKD2

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

Dissecting the human BDNF locus: bidirectional transcription, complex splicing, and multiple promoters

21 January 2018

1 reference

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5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing

21 January 2018

1 reference

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An atlas of combinatorial transcriptional regulation in mouse and man

21 January 2018

1 reference

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The regulated retrotransposon transcriptome of mammalian cells

21 January 2018

1 reference

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Regional activation of the cancer genome by long-range epigenetic remodeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

RNA dust: where are the genes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

Identification of a cytoplasmic complex that adds a cap onto 5'-monophosphate RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

Landscape of transcription in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

Genome-wide analysis of mammalian promoter architecture and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

21 January 2018

1 reference

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Promoter architecture of mouse olfactory receptor genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

STAR: ultrafast universal RNA-seq aligner

21 January 2018

1 reference

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Unsupervised pattern discovery in human chromatin structure through genomic segmentation

21 January 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

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ARTS: accurate recognition of transcription starts in human

21 January 2018

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

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Global transcription in pluripotent embryonic stem cells.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

An integrated ChIP-seq analysis platform with customizable workflows

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

Evaluation of algorithm performance in ChIP-seq peak detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

F-Seq: a feature density estimator for high-throughput sequence tags

21 January 2018

1 reference

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Shape-based peak identification for ChIP-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-S5-S9

An approximate distribution of estimates of variance components.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Accurate ranking of differentially expressed genes by a distribution-free shrinkage approach.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3549800

Natural variation in human gene expression assessed in lymphoblastoid cells

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23368783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-S5-S9

reason for deprecated rank

incorrect identifier value

1 reference

PubMed publication ID

23368783

10.1186/1471-2164-14-S1-S9

3 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcgenomics/PatrickBLY13

23 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23368783%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

PubMed publication ID

23368783

1 reference