(Q34571003)

3 August 2017

title

Evolutionary, structural and functional interplay of the IκB family members (English)

1 reference

3 August 2017

Shaherin Basith

1

1 reference

3 August 2017

Balachandran Manavalan

series ordinal

2

1 reference

3 August 2017

Vijayakumar Gosu

series ordinal

3

1 reference

3 August 2017

Sangdun Choi

series ordinal

4

1 reference

3 August 2017

language of work or name

English

0 references

publication date

23 January 2013

1 reference

3 August 2017

1 reference

3 August 2017

volume

8

1 reference

3 August 2017

issue

1

1 reference

3 August 2017

page(s)

e54178

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Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

23 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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Role of nuclear IkappaB proteins in the regulation of host immune responses

7 July 2018

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Comparative protein structure modeling using Modeller

7 July 2018

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Shared principles in NF-kappaB signaling

7 July 2018

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Toll-like receptor signal transduction

7 July 2018

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Negative regulation of toll-like receptor signaling by NF-kappaB p50 ubiquitination blockade

7 July 2018

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Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Crucial roles of binding sites for NF-kappaB and C/EBPs in IkappaB-zeta-mediated transcriptional activation

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Ankyrin repeat: a unique motif mediating protein-protein interactions.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Rel homology domain-containing transcription factors in the cnidarian Nematostella vectensis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Statistical potential for assessment and prediction of protein structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Neofunctionalization in vertebrates: the example of retinoic acid receptors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Circuitry of nuclear factor kappaB signaling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

A novel member of the IkappaB family, human IkappaB-zeta, inhibits transactivation of p65 and its DNA binding

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

IkappaBNS inhibits induction of a subset of Toll-like receptor-dependent genes and limits inflammation.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Two rounds of whole genome duplication in the ancestral vertebrate

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Selecton: a server for detecting evolutionary forces at a single amino-acid site

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Positive and negative regulation of nuclear factor-kappaB-mediated transcription by IkappaB-zeta, an inducible nuclear protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Duplication and divergence: the evolution of new genes and old ideas

7 July 2018

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Computational approaches to unveiling ancient genome duplications

7 July 2018

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7 July 2018

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Protein motions promote catalysis

7 July 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

MrBayes 3: Bayesian phylogenetic inference under mixed models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

X-ray crystal structure of an IkappaBbeta x NF-kappaB p65 homodimer complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Peptide-induced negative selection of thymocytes activates transcription of an NF-kappa B inhibitor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Crystal structure of the ankyrin repeat domain of Bcl-3: a unique member of the IkappaB protein family.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Conformational change of proteins arising from normal mode calculations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Anisotropy of fluctuation dynamics of proteins with an elastic network model

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

The evolutionary fate and consequences of duplicate genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

EMBOSS: the European Molecular Biology Open Software Suite

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Signal-dependent and -independent degradation of free and NF-kappa B-bound IkappaBalpha

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

The probability of duplicate gene preservation by subfunctionalization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Protein secondary structure prediction based on position-specific scoring matrices

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

The crystal structure of the IkappaBalpha/NF-kappaB complex reveals mechanisms of NF-kappaB inactivation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Structure of an IkappaBalpha/NF-kappaB complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Functional redundancy of the nuclear factor kappa B inhibitors I kappa B alpha and I kappa B beta

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

I kappa B epsilon, a novel member of the I kappa B family, controls RelA and cRel NF-kappa B activity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

A conserved signaling pathway: the Drosophila toll-dorsal pathway

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Basal phosphorylation of the PEST domain in the I(kappa)B(beta) regulates its functional interaction with the c-rel proto-oncogene product

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Origins of immunity: Relish, a compound Rel-like gene in the antibacterial defense of Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

The oncoprotein Bcl-3 directly transactivates through kappa B motifs via association with DNA-binding p50B homodimers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Structure, regulation and function of NF-kappa B

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

The PEST-like sequence of I kappa B alpha is responsible for inhibition of DNA binding but not for cytoplasmic retention of c-Rel or RelA homodimers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

Activation of DNA-binding activity in an apparently cytoplasmic precursor of the NF-kappa B transcription factor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

I kappa B gamma, a 70 kd protein identical to the C-terminal half of p110 NF-kappa B: a new member of the I kappa B family

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553144

The nuclear I kappaB protein I kappaB zeta specifically binds NF-kappaB p50 homodimers and forms a ternary complex on kappaB DNA.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

Rel/NF-kappa B transcription factors and I kappa B inhibitors: evolution from a unique common ancestor.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

InterPro protein classification

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

Molecular modeling-based evaluation of dual function of IκBζ ankyrin repeat domain in toll-like receptor signaling

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

Anisotropic network model: systematic evaluation and a new web interface.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

Collective motions of RNA polymerases. Analysis of core enzyme, elongation complex and holoenzyme.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

Hinge-bending motion in citrate synthase arising from normal mode calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0054178

EMBOSS opens up sequence analysis. European Molecular Biology Open Software Suite

21 January 2018

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12 December 2020

Statistical methods for testing functional divergence after gene duplication

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12 December 2020

CHARMM-GUI: a web-based graphical user interface for CHARMM

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12 December 2020

Variational calculation of the normal modes of a large macromolecule: methods and some initial results

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12 December 2020

Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0054178

Identifiers

DOI

1 reference

3 August 2017

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1 reference

3 August 2017

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