(Q34571285)

3 August 2017

title

Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae (English)

1 reference

3 August 2017

main subject

Saccharomyces cerevisiae

1 reference

6

Soo Rin Kim

1 reference

3 August 2017

Yuping Lin

1

1 reference

3 August 2017

Kulika Chomvong

2

1 reference

3 August 2017

Ligia Acosta-Sampson

3

1 reference

3 August 2017

Raíssa Estrela

4

1 reference

3 August 2017

Jonathan M Galazka

5

1 reference

3 August 2017

Yong-Su Jin

7

1 reference

3 August 2017

Jamie Hd Cate

8

1 reference

3 August 2017

publication date

27 August 2014

1 reference

Biotechnology for Biofuels

3 August 2017

published in

1 reference

3 August 2017

volume

7

1 reference

3 August 2017

issue

1

1 reference

3 August 2017

page(s)

126

1 reference

Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

27 August 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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7 July 2018

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Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast

7 July 2018

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Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae

7 July 2018

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Single amino acid substitutions in HXT2.4 from Scheffersomyces stipitis lead to improved cellobiose fermentation by engineered Saccharomyces cerevisiae

7 July 2018

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The zinc cluster protein Sut1 contributes to filamentation in Saccharomyces cerevisiae.

7 July 2018

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Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress

7 July 2018

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7 July 2018

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Promoter engineering: recent advances in controlling transcription at the most fundamental level

7 July 2018

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Customized optimization of metabolic pathways by combinatorial transcriptional engineering

7 July 2018

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Dynamic metabolomics differentiates between carbon and energy starvation in recombinant Saccharomyces cerevisiae fermenting xylose

7 July 2018

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Which yeast species shall I choose? Saccharomyces cerevisiae versus Pichia pastoris (review).

7 July 2018

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Characterizing the roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30.

7 July 2018

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Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries

7 July 2018

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Simultaneous co-fermentation of mixed sugars: a promising strategy for producing cellulosic ethanol

7 July 2018

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Glucose signaling-mediated coordination of cell growth and cell cycle in Saccharomyces cerevisiae.

7 July 2018

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Cofermentation of cellobiose and galactose by an engineered Saccharomyces cerevisiae strain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression

7 July 2018

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Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation

7 July 2018

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Cellodextrin Transport in Yeast for Improved Biofuel Production

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Functional domains of yeast hexokinase 2

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Cross-reactions between engineered xylose and galactose pathways in recombinant Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

The path to next generation biofuels: successes and challenges in the era of synthetic biology

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Snf1 controls the activity of adr1 through dephosphorylation of Ser230.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Novel evolutionary engineering approach for accelerated utilization of glucose, xylose, and arabinose mixtures by engineered Saccharomyces cerevisiae strains.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Nsf1/Ypl230w participates in transcriptional activation during non-fermentative growth and in response to salt stress in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

How Saccharomyces responds to nutrients

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Yap5 is an iron-responsive transcriptional activator that regulates vacuolar iron storage in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Engineering of Saccharomyces cerevisiae for efficient anaerobic alcoholic fermentation of L-arabinose

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Towards industrial pentose-fermenting yeast strains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Genomic analysis of the hierarchical structure of regulatory networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Tpk3 and Snf1 protein kinases regulate Rgt1 association with Saccharomyces cerevisiae HXK2 promoter

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Computationally analyzing the possible biological function of YJL103C--an ORF potentially involved in the regulation of energy process in yeast.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

SUT1-promoted sterol uptake involves the ABC transporter Aus1 and the mannoprotein Dan1 whose synergistic action is sufficient for this process

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Multi-level response of the yeast genome to glucose

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Differential expression in SAGE: accounting for normal between-library variation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Modulating the distribution of fluxes among respiration and fermentation by overexpression of HAP4 in Saccharomyces cerevisiae.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Glucose-sensing and -signalling mechanisms in yeast.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Metabolic-flux profiling of the yeasts Saccharomyces cerevisiae and Pichia stipitis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

FunSpec: a web-based cluster interpreter for yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Nitrogen regulation in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Convergence of TOR-nitrogen and Snf1-glucose signaling pathways onto Gln3.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

SUT1p interaction with Cyc8p(Ssn6p) relieves hypoxic genes from Cyc8p-Tup1p repression in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

SUT1 is a putative Zn[II]2Cys6-transcription factor whose upregulation enhances both sterol uptake and synthesis in aerobically growing Saccharomyces cerevisiae cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Nitrogen catabolite repression in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

A novel regulator of G protein signalling in yeast, Rgs2, downregulates glucose-activation of the cAMP pathway through direct inhibition of Gpa2.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Function and regulation of yeast hexose transporters

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

The PDE1-encoded low-affinity phosphodiesterase in the yeast Saccharomyces cerevisiae has a specific function in controlling agonist-induced cAMP signaling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Sip4, a Snf1 kinase-dependent transcriptional activator, binds to the carbon source-responsive element of gluconeogenic genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Regulators of pseudohyphal differentiation in Saccharomyces cerevisiae identified through multicopy suppressor analysis in ammonium permease mutant strains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Yeast carbon catabolite repression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Kar4p, a karyogamy-specific component of the yeast pheromone response pathway.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Dual influence of the yeast Cat1p (Snf1p) protein kinase on carbon source-dependent transcriptional activation of gluconeogenic genes by the regulatory gene CAT8.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

A new efficient gene disruption cassette for repeated use in budding yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Isolation and characterization of the Saccharomyces cerevisiae SUT1 gene involved in sterol uptake

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Structural and functional analysis of the MAL1 locus of Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Identification and characterization of HAP4: a third component of the CCAAT-bound HAP2/HAP3 heteromer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

The UGA3 gene regulating the GABA catabolic pathway in Saccharomyces cerevisiae codes for a putative zinc-finger protein acting on RNA amount

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Cloning and characteristics of a positive regulatory gene, THI2 (PHO6), of thiamin biosynthesis in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Multifunctional yeast high-copy-number shuttle vectors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243952

Analysis of oligosaccharides in lignocellulosic biomass hydrolysates by high-performance anion-exchange chromatography coupled with mass spectrometry (HPAEC-MS).

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Continuous co-fermentation of cellobiose and xylose by engineered Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Glucose regulates transcription in yeast through a network of signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Differential glucose repression in common yeast strains in response to HXK2 deletion

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Directed evolution of a cellodextrin transporter for improved biofuel production under anaerobic conditions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Co-fermentation of xylose and cellobiose by an engineered Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Genome-wide location analysis reveals an important overlap between the targets of the yeast transcriptional regulators Rds2 and Adr1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Applications of the Restriction Free (RF) cloning procedure for molecular manipulations and protein expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Single cell analysis applied to antibody fragment production with Bacillus megaterium: development of advanced physiology and bioprocess state estimation tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Nutritional requirements of the BY series ofSaccharomyces cerevisiaestrains for optimum growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Dissection of the promoter of theHAP4 gene inS. cerevisiae unveils a complex regulatory framework of transcriptional regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13068-014-0126-6

Co-expression of a cellobiose phosphorylase and lactose permease enables intracellular cellobiose utilisation by Saccharomyces cerevisiae

21 January 2018

1 reference

12 December 2020

Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in Saccharomyces cerevisiae

1 reference

12 December 2020

Inhibition and inactivation of glucose-phosphorylating enzymes from Saccharomyces cerevisiae by D-xylose

1 reference

12 December 2020

A dominant mutation that alters the regulation of INO1 expression in Saccharomyces cerevisiae

1 reference

12 December 2020

Energetic benefits and rapid cellobiose fermentation by Saccharomyces cerevisiae expressing cellobiose phosphorylase and mutant cellodextrin transporters

1 reference

12 December 2020

Specific inactivation of yeast hexokinase induced by xylose in the presence of a phosphoryl donor substrate

1 reference

12 December 2020

10.1186/S13068-014-0126-6

Identifiers

DOI

1 reference

Dimensions Publication ID

3 August 2017

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1 reference

3 August 2017

1 reference