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Disentangling the many layers of eukaryotic transcriptional regulation
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title
Disentangling the many layers of eukaryotic transcriptional regulation
(English)
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PubMed
author name string
Katherine M. Lelli
series ordinal
1
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Matthew Slattery
series ordinal
2
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Richard S. Mann
series ordinal
3
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stated in
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language of work or name
English
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PubMed
publication date
2012
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stated in
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published in
Annual Review of Genetics
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PubMed
volume
46
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PubMed
page(s)
43-68
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PubMed
cites work
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Pioneer transcription factors: establishing competence for gene expression
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Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition
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21 March 2017
The nuclear envelope as a chromatin organizer
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Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism
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21 March 2017
The MADS box transcription factor MEF2C regulates melanocyte development and is a direct transcriptional target and partner of SOX10
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Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
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Chromatin landscape dictates HSF binding to target DNA elements
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21 March 2017
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
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21 March 2017
The role of DNA shape in protein-DNA recognition
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21 March 2017
Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA
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21 March 2017
Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
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21 March 2017
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
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21 March 2017
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
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21 March 2017
Repression by Groucho/TLE/Grg proteins: genomic site recruitment generates compacted chromatin in vitro and impairs activator binding in vivo
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21 March 2017
Functional evolution of a cis-regulatory module
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21 March 2017
Translating the Histone Code
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21 March 2017
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DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity
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21 March 2017
Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure
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21 March 2017
An Atomic Model of the Interferon-β Enhanceosome
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21 March 2017
Crystal structure of a ternary SAP-1/SRF/c-fos SRE DNA complex
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21 March 2017
Structural studies of Ets-1/Pax5 complex formation on DNA
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21 March 2017
High-resolution profiling of histone methylations in the human genome
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21 March 2017
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21 March 2017
Distinguishing direct versus indirect transcription factor-DNA interactions
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21 March 2017
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
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21 March 2017
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
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21 March 2017
Transvection effects in Drosophila
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21 March 2017
Capturing chromosome conformation
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21 March 2017
Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase
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21 March 2017
A transcription factor collective defines cardiac cell fate and reflects lineage history
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Histone variants--ancient wrap artists of the epigenome
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The enhanceosome
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21 March 2017
The role of response elements organization in transcription factor selectivity: the IFN-β enhanceosome example
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21 March 2017
Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development
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21 March 2017
Deciphering the Sox-Oct partner code by quantitative cooperativity measurements
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21 March 2017
Loss of function but no gain of function caused by amino acid substitutions in the hexapeptide of Hoxa1 in vivo
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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
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7 April 2017
Identification of functional elements and regulatory circuits by Drosophila modENCODE
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7 April 2017
Charting histone modifications and the functional organization of mammalian genomes
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7 April 2017
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7 April 2017
Diversity and complexity in DNA recognition by transcription factors
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7 April 2017
Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome
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7 April 2017
Combinatorial complexity in chromatin structure and function: revisiting the histone code
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28 September 2017
Differential regulation of mesodermal gene expression by Drosophila cell type-specific Forkhead transcription factors
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28 September 2017
Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity
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28 September 2017
Three-dimensional folding and functional organization principles of the Drosophila genome
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28 September 2017
Chromosome organization in the nucleus - charting new territory across the Hi-Cs
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28 September 2017
Distal chromatin structure influences local nucleosome positions and gene expression.
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28 September 2017
A decade of 3C technologies: insights into nuclear organization
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28 September 2017
Discovering genome regulation with 3C and 3C-related technologies
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28 September 2017
Enhancer and promoter interactions-long distance calls
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28 September 2017
Variable motif utilization in homeotic selector (Hox)-cofactor complex formation controls specificity
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28 September 2017
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
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28 September 2017
Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex.
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28 September 2017
A regulatory archipelago controls Hox genes transcription in digits
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28 September 2017
Competition for cofactor-dependent DNA binding underlies Hox phenotypic suppression
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28 September 2017
Insights into Hox protein function from a large scale combinatorial analysis of protein domains
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28 September 2017
Ultrastructural study of transcription factories in mouse erythroblasts
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28 September 2017
Temporal coordination of gene networks by Zelda in the early Drosophila embryo.
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28 September 2017
Animal transcription networks as highly connected, quantitative continua
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28 September 2017
The Pbx interaction motif of Hoxa1 is essential for its oncogenic activity
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28 September 2017
Pioneer factors: directing transcriptional regulators within the chromatin environment
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28 September 2017
Transcription factories in the context of the nuclear and genome organization
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28 September 2017
Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast
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28 September 2017
OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes
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28 September 2017
Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression
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28 September 2017
Polycomb group proteins: repression in 3D.
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28 September 2017
Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
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28 September 2017
Functional synthetic Antennapedia genes and the dual roles of YPWM motif and linker size in transcriptional activation and repression
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28 September 2017
Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4.
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28 September 2017
Dynamics of nucleosome invasion by DNA binding proteins
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28 September 2017
The cis-regulatory logic of Hedgehog gradient responses: key roles for gli binding affinity, competition, and cooperativity
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28 September 2017
Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter.
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28 September 2017
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
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28 September 2017
Genomic and biochemical insights into the specificity of ETS transcription factors
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28 September 2017
Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters
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28 September 2017
Hox and Pbx factors control retinoic acid synthesis during hindbrain segmentation.
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28 September 2017
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
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28 September 2017
Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
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28 September 2017
A cis-regulatory map of the Drosophila genome.
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28 September 2017
Occlusion of regulatory sequences by promoter nucleosomes in vivo
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28 September 2017
Regulation of FoxO transcription factors by acetylation and protein-protein interactions
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28 September 2017
Chromatin higher-order structures and gene regulation
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28 September 2017
Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway
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28 September 2017
Genome-wide transcription factor binding: beyond direct target regulation
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28 September 2017
Operating on chromatin, a colorful language where context matters
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28 September 2017
Selection of distinct Hox-Extradenticle interaction modes fine-tunes Hox protein activity
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28 September 2017
Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.
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28 September 2017
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
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28 September 2017
Integrative model of genomic factors for determining binding site selection by estrogen receptor-α
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28 September 2017
Emerging properties of animal gene regulatory networks
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28 September 2017
Nucleosome-mediated cooperativity between transcription factors
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28 September 2017
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
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28 September 2017
Gene regulation by nucleosome positioning
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28 September 2017
The language of histone crosstalk
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28 September 2017
Shadow enhancers foster robustness of Drosophila gastrulation
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
A review of post-translational modifications and subcellular localization of Ets transcription factors: possible connection with cancer and involvement in the hypoxic response.
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PubMed Central
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28 September 2017
Fast signals and slow marks: the dynamics of histone modifications
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28 September 2017
The three-dimensional architecture of Hox cluster silencing
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Phenotypic robustness conferred by apparently redundant transcriptional enhancers
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Origins of specificity in protein-DNA recognition.
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28 September 2017
Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Nucleosome dynamics define transcriptional enhancers
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Function and specificity of synthetic Hox transcription factors in vivo.
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28 September 2017
A comprehensive map of insulator elements for the Drosophila genome
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Mechanisms of transcription factor selectivity
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28 September 2017
Multi-step control of muscle diversity by Hox proteins in the Drosophila embryo
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Acquisition of SOX transcription factor specificity through protein-protein interaction, modulation of Wnt signalling and post-translational modification.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Generic binding sites, generic DNA-binding domains: where does specific promoter recognition come from?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
SOX-partner code for cell specification: Regulatory target selection and underlying molecular mechanisms
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Hox specificity unique roles for cofactors and collaborators
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
What controls nucleosome positions?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Genome-wide views of chromatin structure
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Multifactorial regulation of a hox target gene
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Properties of developmental gene regulatory networks
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
The DNA-encoded nucleosome organization of a eukaryotic genome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Shadow enhancers as a source of evolutionary novelty
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Expanding the specificity of DNA targeting by harnessing cooperative assembly
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
A unique Extradenticle recruitment mode in the Drosophila Hox protein Ultrabithorax
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Chromosome kissing
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Hox cofactors in vertebrate development
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Regulation of odorant receptors: one allele at a time
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Logic functions of the genomic cis-regulatory code
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Post-translational modifications influence transcription factor activity: a view from the ETS superfamily
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
HOXB6 overexpression in murine bone marrow immortalizes a myelomonocytic precursor in vitro and causes hematopoietic stem cell expansion and acute myeloid leukemia in vivo
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancer
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Active genes dynamically colocalize to shared sites of ongoing transcription
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Collaborative competition mechanism for gene activation in vivo
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Controlling the double helix
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Regulation of tumor necrosis factor alpha gene expression by mycobacteria involves the assembly of a unique enhanceosome dependent on the coactivator proteins CBP/p300.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Hox genes and the evolution of the arthropod body plan
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
When Ets transcription factors meet their partners
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Highly conserved amino acids in Pax and Ets proteins are required for DNA binding and ternary complex assembly
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
HoxB8 requires its Pbx-interaction motif to block differentiation of primary myeloid progenitors and of most cell line models of myeloid differentiation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Cooperativity in transcriptional control
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Identification of novel functional regions important for the activity of HOXB7 in mammalian cells
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
HoxA9-mediated immortalization of myeloid progenitors requires functional interactions with TALE cofactors Pbx and Meis
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Extra specificity from extradenticle: the partnership between HOX and PBX/EXD homeodomain proteins
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
An extradenticle-induced conformational change in a HOX protein overcomes an inhibitory function of the conserved hexapeptide motif
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
The segment identity functions of Ultrabithorax are contained within its homeo domain and carboxy-terminal sequences
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Colinearity and functional hierarchy among genes of the homeotic complexes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Patterning in the vertebrate limb
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Unscheduled DNA synthesis after partial UV irradiation of the cell nucleus. Distribution in interphase and metaphase
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 September 2017
Developmental regulation of chromatin conformation by Hox proteins in Drosophila
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
The TAGteam motif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Shadow enhancers: frequently asked questions about distributed cis-regulatory information and enhancer redundancy
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Nucleosomes and the accessibility problem
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Structural constraints in collaborative competition of transcription factors against the nucleosome
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Nucleosome sequence preferences influence in vivo nucleosome organization
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Dissecting the functional specificities of two Hox proteins
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Different gene regulation strategies revealed by analysis of binding motifs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
Functional dissection of Ultrabithorax proteins in D. melanogaster.
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31 May 2018
Are cross-regulatory interactions between homoeotic genes functionally significant?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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31 May 2018
The dynamic architecture of Hox gene clusters.
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PubMed Central
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28 November 2018
High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 November 2018
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 November 2018
Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 November 2018
Regulation of Hox activity: insights from protein motifs.
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28 November 2018
A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.
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28 November 2018
A post-translational modification code for transcription factors: sorting through a sea of signals.
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28 November 2018
HOXB6 protein is bound to CREB-binding protein and represses globin expression in a DNA binding-dependent, PBX interaction-independent process
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28 November 2018
The Hexapeptide and Linker Regions of the AbdA Hox Protein Regulate Its Activating and Repressive Functions
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28 November 2018
Modifying gene expression programs by altering core promoter chromatin architecture.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4295906
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28 November 2018
The developmental effect of overexpressing a Ubx product in Drosophila embryos is dependent on its interactions with other homeotic products.
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28 November 2018
Information display by transcriptional enhancers
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22934649
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Large-scale nuclear architecture and transcriptional control
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22934649
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22934649
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1146/ANNUREV-GENET-110711-155437
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
176822
Fatcat ID
release_osv45dozkvgqzfnjkqbktzuxsa
0 references
OpenCitations bibliographic resource ID
176822
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
176822
PMC publication ID
4295906
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
176822
PubMed publication ID
22934649
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
176822
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