(Q28591313)

31 January 2017

title

Deciphering the Sox-Oct partner code by quantitative cooperativity measurements (English)

1 reference

SRY (sex determining region Y)-box 18

31 January 2017

main subject

1 reference

SRY (sex determining region Y)-box 17

1 reference

SRY (sex determining region Y)-box 2

1 reference

SRY (sex determining region Y)-box 8

1 reference

SRY (sex determining region Y)-box 5

1 reference

POU domain, class 5, transcription factor 1

1 reference

SRY (sex determining region Y)-box 15

1 reference

SRY (sex determining region Y)-box 9

1 reference

Sex determining region of Chr Y

1 reference

SRY (sex determining region Y)-box 4

1 reference

SRY (sex determining region Y)-box 14

1 reference

4

Shyam Prabhakar

1 reference

31 January 2017

Calista K. L. Ng

1

1 reference

31 January 2017

Noel X. Li

2

1 reference

31 January 2017

Sheena Chee

3

1 reference

31 January 2017

Prasanna R. Kolatkar

5

1 reference

31 January 2017

Ralf Jauch

6

1 reference

31 January 2017

language of work or name

English

0 references

publication date

1 June 2012

1 reference

31 January 2017

published in

Nucleic Acids Research

1 reference

31 January 2017

volume

40

1 reference

31 January 2017

issue

11

1 reference

31 January 2017

page(s)

4933–4941

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

31 January 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageQuant

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3367189/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The crystal structure of the Sox4 HMG domain-DNA complex suggests a mechanism for positional interdependence in DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF- effectors

17 March 2017

1 reference

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Interplay of Oct4 with Sox2 and Sox17: a molecular switch from stem cell pluripotency to specifying a cardiac fate

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

The structure of Sox17 bound to DNA reveals a conserved bending topology but selective protein interaction platforms

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

I-TASSER server for protein 3D structure prediction

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Core transcriptional regulatory circuitry in human embryonic stem cells

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Interplay of SOX and POU factors in regulation of the Nestin gene in neural primordial cells

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Matching SOX: partner proteins and co-factors of the SOX family of transcriptional regulators

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Structural studies of Ets-1/Pax5 complex formation on DNA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Pax6 and SOX2 form a co-DNA-binding partner complex that regulates initiation of lens development

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Pairing SOX off: with partners in the regulation of embryonic development

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Sox-4, an Sry-like HMG box protein, is a transcriptional activator in lymphocytes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Transcription factor ATF cDNA clones: an extensive family of leucine zipper proteins able to selectively form DNA-binding heterodimers

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Diversity and complexity in DNA recognition by transcription factors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Animal transcription networks as highly connected, quantitative continua

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Nucleosome-mediated cooperativity between transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

DNA specificity determinants associate with distinct transcription factor functions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

SOX-partner code for cell specification: Regulatory target selection and underlying molecular mechanisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Transcriptional regulation of nanog by OCT4 and SOX2.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

The gene for the embryonic stem cell coactivator UTF1 carries a regulatory element which selectively interacts with a complex composed of Oct-3/4 and Sox-2.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Synergistic activation of the fibroblast growth factor 4 enhancer by Sox2 and Oct-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Differential recognition of target genes by nuclear receptor monomers, dimers, and heterodimers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

DNA-binding properties of the product of the testis-determining gene and a related protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Purification, crystallization and preliminary X-ray diffraction analysis of the HMG domain of Sox17 in complex with DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

POU domain family values: flexibility, partnerships, and developmental codes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367189

Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA

3 June 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22344693

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS153

1 reference

1 reference

1 reference

1 reference