(Q34573868)

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Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Triticum aestivum

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1 reference

based on heuristic

inferred from title

object named as

Hirokazu Handa

5

0 references

object named as

Takeshi Itoh

6

0 references

author name string

Youko Oono

1

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Fuminori Kobayashi

2

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Yoshihiro Kawahara

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Takayuki Yazawa

4

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Europe PubMed Central

PubMed publication ID

3 August 2017

Takashi Matsumoto

7

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Europe PubMed Central

PubMed publication ID

3 August 2017

language of work or name

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publication date

4 February 2013

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Europe PubMed Central

PubMed publication ID

3 August 2017

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Europe PubMed Central

PubMed publication ID

3 August 2017

14

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

77

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

1 reference

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7 July 2018

Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Next-generation transcriptome assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Discovery of barley miRNAs through deep sequencing of short reads.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

A putative novel transcription factor, AtSKIP, is involved in abscisic acid signalling and confers salt and osmotic tolerance in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

De novo transcriptome assembly with ABySS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Differential cofactor requirements for histone eviction from two nucleosomes at the yeast PHO84 promoter are determined by intrinsic nucleosome stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

ABySS: a parallel assembler for short read sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Molecular regulators of phosphate homeostasis in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Sucrose transport in the phloem: integrating root responses to phosphorus starvation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Sumoylation, a post-translational regulatory process in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Target mimicry provides a new mechanism for regulation of microRNA activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

The Calvin cycle revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

The Swi/Snf family nucleosome-remodeling complexes and transcriptional control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Phosphate availability affects the thylakoid lipid composition and the expression of SQD1, a gene required for sulfolipid biosynthesis in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

7 July 2018

Phosphate utilization efficiency correlates with expression of low-affinity phosphate transporters and noncoding RNA, IPS1, in barley

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Cytokinin represses phosphate-starvation response through increasing of intracellular phosphate level.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Phosphate Starvation Inducible 'Bypasses' of Adenylate and Phosphate Dependent Glycolytic Enzymes in Brassica nigra Suspension Cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Increased sedoheptulose-1,7-bisphosphatase activity in transgenic tobacco plants stimulates photosynthesis and growth from an early stage in development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Identification and characterization of the Arabidopsis PHO1 gene involved in phosphate loading to the xylem.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Phosphate status affects the gene expression, protein content and enzymatic activity of UDP-glucose pyrophosphorylase in wild-type and pho mutants of Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

RNase T2 genes from rice and the evolution of secretory ribonucleases in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

27 October 2018

Dissection of local and systemic transcriptional responses to phosphate starvation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3598684

9 December 2018

Redundancy of chromatin remodeling pathways for the induction of the yeast PHO5 promoter in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Involvement of OsSPX1 in phosphate homeostasis in rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of rice purple acid phosphatases related to phosphate starvation signalling

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Histone H2A.Z regulates the expression of several classes of phosphate starvation response genes but not as a transcriptional activator

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The WRKY6 transcription factor modulates PHOSPHATE1 expression in response to low Pi stress in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and comparative analysis of the wheat TaPT2 promoter: identification in silico of new putative regulatory motifs conserved between monocots and dicots

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WRKY70 modulates the selection of signaling pathways in plant defense

1 reference

https://pubmed.ncbi.nlm.nih.gov/23379779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-14-77

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

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