(Q34578264)

3 August 2017

title

Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes (English)

1 reference

3 August 2017

Wen-Hsiung Li

2

0 references

author name string

Yong H Woo

series ordinal

1

1 reference

3 August 2017

language of work or name

English

0 references

publication date

7 February 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

3 August 2017

published in

1 reference

3 August 2017

volume

108

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3 August 2017

issue

8

1 reference

3 August 2017

page(s)

3306-3311

1 reference

The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

The logic of chromatin architecture and remodelling at promoters

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Unstable tandem repeats in promoters confer transcriptional evolvability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Searching for bidirectional promoters in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Bidirectional promoters generate pervasive transcription in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

The DNA-encoded nucleosome organization of a eukaryotic genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Genome-wide profiling of salt fractions maps physical properties of chromatin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Two strategies for gene regulation by promoter nucleosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Nucleosome organization in the Drosophila genome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

CORUM: the comprehensive resource of mammalian protein complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Transcription factor binding and modified histones in human bidirectional promoters

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Systematic analysis of head-to-head gene organization: evolutionary conservation and potential biological relevance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Proteome survey reveals modularity of the yeast cell machinery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

The evolutionary dynamics of eukaryotic gene order

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

An abundance of bidirectional promoters in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Organismal complexity, protein complexity, and gene duplicability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Translational control by the 3'-UTR: the ends specify the means.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Close head-to-head juxtaposition of genes favors their coordinate regulation in Drosophila melanogaster.

7 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100210108

Evolution of chromosome organization driven by selection for reduced gene expression noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100210108

Intrinsic variability of gene expression encoded in nucleosome positioning sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100210108

Origins of bidirectional promoters: computational analyses of intergenic distance in the human genome

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3044413

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

27 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1100210108

Statistical design and the analysis of gene expression microarray data

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21300882

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21300882

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Is optimal gene order impossible?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21300882

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1100210108

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference