(Q34600920)

3 August 2017

title

Folding, misfolding, and amyloid protofibril formation of WW domain FBP28. (English)

1 reference

3 August 2017

Yuguang Mu

1

1 reference

3 August 2017

Lars Nordenskiöld

series ordinal

2

1 reference

3 August 2017

James P Tam

series ordinal

3

1 reference

3 August 2017

language of work or name

English

0 references

publication date

13 March 2006

1 reference

3 August 2017

number of pages

10

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

3 August 2017

volume

90

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3 August 2017

issue

11

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3 August 2017

page(s)

3983-3992

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

3 August 2017

cites work

1 reference

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Comparative structural and energetic analysis of WW domain-peptide interactions

7 July 2018

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Context-dependent contributions of backbone hydrogen bonding to beta-sheet folding energetics

7 July 2018

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7 July 2018

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7 July 2018

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Integrating folding kinetics and protein function: biphasic kinetics and dual binding specificity in a WW domain

7 July 2018

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7 July 2018

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7 July 2018

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Rapid amyloid fiber formation from the fast-folding WW domain FBP28.

7 July 2018

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7 July 2018

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The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: lessons for protein design?

7 July 2018

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7 July 2018

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Multiplexed-replica exchange molecular dynamics method for protein folding simulation

7 July 2018

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Determination of a transition state at atomic resolution from protein engineering data

7 July 2018

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Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

7 July 2018

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The free energy landscape for beta hairpin folding in explicit water

7 July 2018

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Using flexible loop mimetics to extend -value analysis to secondary structure interactions

7 July 2018

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Ultrafast folding of WW domains without structured aromatic clusters in the denatured state

7 July 2018

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The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1

7 July 2018

1 reference

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Generalized-ensemble algorithms for molecular simulations of biopolymers

7 July 2018

1 reference

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Solution structure of a Nedd4 WW domain-ENaC peptide complex

7 July 2018

1 reference

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Folding simulations of a three-stranded antiparallel beta -sheet peptide

7 July 2018

1 reference

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Measuring the rate of intramolecular contact formation in polypeptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Structural analysis of WW domains and design of a WW prototype

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Evolutionary conservation in protein folding kinetics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Mapping the transition state of the WW domain beta-sheet.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

beta-hairpin stability and folding: molecular dynamics studies of the first beta-hairpin of tendamistat

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Experiment and theory highlight role of native state topology in SH3 folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

7 July 2018

1 reference

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Stability of the beta-sheet of the WW domain: A molecular dynamics simulation study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Folding dynamics and mechanism of beta-hairpin formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides.

7 July 2018

1 reference

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Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.

26 October 2018

1 reference

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Capturing intermediate structures of Alzheimer's beta-amyloid, Abeta(1-40), by solid-state NMR spectroscopy

26 October 2018

1 reference

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Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics study

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Structure of Met-enkephalin in explicit aqueous solution using replica exchange molecular dynamics

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

A consistent potential energy parameter set for lipids: dipalmitoylphosphatidylcholine as a benchmark of the GROMOS96 45A3 force field

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Interpreting the folding kinetics of helical proteins

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459504

Energy landscape of a small peptide revealed by dihedral angle principal component analysis

9 December 2018

1 reference

12 December 2020

The folding mechanism of a beta-sheet: the WW domain

1 reference

12 December 2020

Folding-unfolding thermodynamics of a beta-heptapeptide from equilibrium simulations

1 reference

12 December 2020

Toward assessing the position-dependent contributions of backbone hydrogen bonding to beta-sheet folding thermodynamics employing amide-to-ester perturbations

1 reference

12 December 2020

10.1529/BIOPHYSJ.105.076406

Identifiers

DOI

1 reference

3 August 2017

1 reference

3 August 2017

1 reference