(Q34602018)

English

Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

denitrification

1 reference

based on heuristic

inferred from title

Christopher M Jones

object named as

Christopher M Jones

2

0 references

object named as

Sara Hallin

3

0 references

author name string

Daniel R H Graf

1

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

language of work or name

0 references

publication date

1 December 2014

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

e114118

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

copyright license

Creative Commons Attribution 4.0 International

1 December 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Phylogenetic conservatism of functional traits in microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Impacts of nitrogen application rates on the activity and diversity of denitrifying bacteria in the Broadbalk Wheat Experiment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitrous oxide production and consumption: regulation of gene expression by gas-sensitive transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitrifying and denitrifying pathways of methanotrophic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Evolutionary microbial genomics: insights into bacterial host adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Selectivity in mammalian extinction risk and threat types: a new measure of phylogenetic signal strength in binary traits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Insights into the effect of soil pH on N(2)O and N(2) emissions and denitrifier community size and activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Survival of the fittest: how Brucella strains adapt to their intracellular niche in the host

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Biochemical and genomic analysis of the denitrification pathway within the genus Neisseria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitrous oxide (N2O): the dominant ozone-depleting substance emitted in the 21st century

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitrite reductase NirS is required for type III secretion system expression and virulence in the human monocyte cell line THP-1 by Pseudomonas aeruginosa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Infernal 1.0: inference of RNA alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

An improved general amino acid replacement matrix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Respiratory transformation of nitrous oxide (N2O) to dinitrogen by Bacteria and Archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Presence of two different active nirS nitrite reductase genes in a denitrifying Thauera sp. from a high-nitrate-removal-rate reactor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Denitrification in pathogenic bacteria: for better or worst?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

ProtTest: selection of best-fit models of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitric oxide reductase (P450nor) from Fusarium oxysporum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Denitrification genes regulate Brucella virulence in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

The unprecedented nos gene cluster of Wolinella succinogenes encodes a novel respiratory electron transfer pathway to cytochrome c nitrous oxide reductase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Denitrifying genes in bacterial and Archaeal genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Cell biology and molecular basis of denitrification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nitrogen oxide reduction in Wolinella succinogenes and Campylobacter species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Nucleotide sequence of the unique nitrate/nitrite-inducible cytochrome P-450 cDNA from Fusarium oxysporum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

7 July 2018

Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

The Prokaryotes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Ecological and evolutionary factors underlying global and local assembly of denitrifier communities

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Phase variation and genomic architecture changes in Azospirillum.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Phenotypic and genotypic heterogeneity among closely related soil-borne N2 - and N2 O-producing Bacillus isolates harboring the nosZ gene

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Mapping field-scale spatial patterns of size and activity of the denitrifier community.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

The role of plant type and salinity in the selection for the denitrifying community structure in the rhizosphere of wetland vegetation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250227

26 October 2018

Recently identified microbial guild mediates soil N2O sink capacity

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

N2O consumption by low-nitrogen soil and its regulation by water and oxygen

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0114118

21 January 2018

Differential responses of nirK- and nirS-carrying bacteria to denitrifying conditions in the anoxic rice field soil

1 reference

https://pubmed.ncbi.nlm.nih.gov/25436772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nitrous oxide from soil denitrification: factors controlling its biological production

1 reference

https://pubmed.ncbi.nlm.nih.gov/25436772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid succession of uncultured marine bacterial and archaeal populations in a denitrifying continuous culture

1 reference

https://pubmed.ncbi.nlm.nih.gov/25436772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Strains in the genusThaueraexhibit remarkably different denitrification regulatory phenotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/25436772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nos gene cluster from gram-positive bacterium Geobacillus thermodenitrificans NG80-2 and functional characterization of the recombinant NosZ

1 reference

https://pubmed.ncbi.nlm.nih.gov/25436772

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0114118

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

2014PLoSO...9k4118G

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34602018&oldid=2058100783"