(Q34620515)

3 August 2017

title

Estimating selection on synonymous codon usage from noisy experimental data (English)

1 reference

3 August 2017

3

D Allan Drummond

1 reference

ORCID Public Data File 2021

3 August 2017

1 reference

author name string

Edward W J Wallace

series ordinal

1

1 reference

3 August 2017

Edoardo M Airoldi

series ordinal

2

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3 August 2017

publication date

14 March 2013

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Molecular Biology and Evolution

3 August 2017

published in

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3 August 2017

volume

30

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3 August 2017

issue

6

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3 August 2017

page(s)

1438-1453

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describes a project that uses

3 August 2017

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=3649678

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

Selection on Codon Bias

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Mutation rate variation in multicellular eukaryotes: causes and consequences

7 July 2018

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7 July 2018

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Synonymous codon usage in Escherichia coli: selection for translational accuracy.

7 July 2018

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7 July 2018

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Noise in protein expression scales with natural protein abundance

7 July 2018

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7 July 2018

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Noise in gene expression: origins, consequences, and control

7 July 2018

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7 July 2018

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Structural insights into translational fidelity

7 July 2018

1 reference

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Variation in the strength of selected codon usage bias among bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

DNA sequence analysis of spontaneous mutagenesis in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

What drives codon choices in human genes?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Codon choice and gene expression: synonymous codons differ in translational accuracy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Codon preferences in free-living microorganisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

The selection-mutation-drift theory of synonymous codon usage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Number and distribution of polyadenylated RNA sequences in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Spontaneous mutagenesis in haploid and diploid Saccharomyces cerevisiae.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3649678

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

26 October 2018

1 reference

12 December 2020

Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage

1 reference

12 December 2020

Codon usage determines translation rate in Escherichia coli

1 reference

12 December 2020

Neighboring base effects on substitution rates in pseudogenes

1 reference

12 December 2020

Identifiers

DOI

10.1093/MOLBEV/MST051

1 reference

release_fetvtwy7hvdydc6jntub6ctixm

3 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/fetvtwy7hvdydc6jntub6ctixm

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3649678

1 reference

3 August 2017

1 reference